Variant report

Variant	rs12209948
Chromosome Location	chr6:54962782-54962783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10456178	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11966562	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12191770	1.00[ASN][1000 genomes]
rs12192396	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12199525	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12213653	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3125276	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4236121	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236122	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4289638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339456	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4398735	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4438959	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4518493	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4712089	1.00[ASN][1000 genomes]
rs4712090	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715497	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4715498	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4715516	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217917	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56776090	1.00[ASN][1000 genomes]
rs62416360	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62416378	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62416416	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416556	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72975482	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72978512	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746448	0.85[EUR][1000 genomes]
rs7755108	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9357829	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9357831	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9382434	0.80[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54962200-54963000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr6:54962400-54962800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr6:54962400-54963000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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