Variant report

Variant	rs62416360
Chromosome Location	chr6:54888083-54888084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10456177	0.81[EUR][1000 genomes]
rs10456178	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10456691	0.82[EUR][1000 genomes]
rs11966562	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12192396	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12195789	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12196771	0.82[EUR][1000 genomes]
rs12202775	0.81[EUR][1000 genomes]
rs12209948	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12213653	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3105258	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3125276	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4078034	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4236121	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4236122	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4283890	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4289638	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4339456	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4398735	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4438959	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4518493	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4712085	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4712086	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4712090	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4715497	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715498	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715516	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62416378	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62416416	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62416556	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6906829	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6907460	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6908172	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72975482	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72978512	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7746448	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7755108	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357829	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357831	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9370364	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9382434	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3368520	chr6:54881042-54905736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54887400-54889800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:54887600-54889400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr6:54888000-54888400	Weak transcription	Primary hematopoietic stem cells	blood

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