Variant report

Variant	rs7755108
Chromosome Location	chr6:54879099-54879100
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10456177	0.82[EUR][1000 genomes]
rs10456178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10456691	0.83[EUR][1000 genomes]
rs11966562	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12192396	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12195789	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12196771	0.83[EUR][1000 genomes]
rs12209948	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12213653	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3105258	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3125276	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4078034	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4236121	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4236122	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4283890	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4289638	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4339456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4398735	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4438959	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4518493	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4712085	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4712086	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4712090	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4715497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4715498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4715516	0.84[EUR][1000 genomes]
rs62416360	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62416378	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62416416	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62416556	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906829	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6907460	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6908172	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72975482	0.82[EUR][1000 genomes]
rs72978512	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7746448	0.88[AMR][1000 genomes]
rs9357829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357831	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9370364	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9382434	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54877200-54881200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:54878400-54880000	Enhancers	Fetal Lung	lung
3	chr6:54878600-54880000	Enhancers	Fetal Brain Female	brain
4	chr6:54878800-54879600	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr6:54878800-54880000	Enhancers	Fetal Brain Male	brain
6	chr6:54879000-54880000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:54879000-54880000	Enhancers	Stomach Mucosa	stomach

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