Variant report
| Variant | rs10456691 |
|---|---|
| Chromosome Location | chr6:54887389-54887390 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10456177 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10456178 | 0.83[EUR][1000 genomes] |
| rs12192396 | 0.83[EUR][1000 genomes] |
| rs12194068 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12196771 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12202775 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12213653 | 0.81[EUR][1000 genomes] |
| rs3125276 | 0.81[EUR][1000 genomes] |
| rs4339456 | 0.83[EUR][1000 genomes] |
| rs4398735 | 0.83[EUR][1000 genomes] |
| rs4438959 | 0.83[EUR][1000 genomes] |
| rs4518493 | 0.81[EUR][1000 genomes] |
| rs4715497 | 0.83[EUR][1000 genomes] |
| rs4715498 | 0.83[EUR][1000 genomes] |
| rs62416360 | 0.82[EUR][1000 genomes] |
| rs62416373 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62416417 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62416556 | 0.83[EUR][1000 genomes] |
| rs7738254 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7755108 | 0.83[EUR][1000 genomes] |
| rs9357829 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3364886 | chr6:54880042-54912395 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 2 | esv3368520 | chr6:54881042-54905736 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv1033756 | chr6:54881828-54944304 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv538225 | chr6:54881828-54944304 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:54883800-54887800 | Weak transcription | Primary hematopoietic stem cells | blood |
