Variant report

Variant	rs62416417
Chromosome Location	chr6:54973984-54973985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10456177	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10456691	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12194068	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12196771	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12202775	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4236121	0.81[EUR][1000 genomes]
rs4712090	0.81[EUR][1000 genomes]
rs4715516	0.81[EUR][1000 genomes]
rs62416373	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62416416	0.82[EUR][1000 genomes]
rs72975482	0.81[EUR][1000 genomes]
rs72978512	0.81[EUR][1000 genomes]
rs7738254	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54972600-54974000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:54972800-54974800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:54973000-54974000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:54973000-54974000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:54973000-54974000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:54973000-54974000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:54973000-54974200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:54973200-54974000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:54973200-54974000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:54973200-54974000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:54973400-54974000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:54973600-54974000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:54973600-54974000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:54973600-54974000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:54973600-54974200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:54973600-54974200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:54973800-54974800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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