Variant report

Variant	rs12192396
Chromosome Location	chr6:54874135-54874136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10456177	0.82[EUR][1000 genomes]
rs10456178	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456691	0.83[EUR][1000 genomes]
rs11966562	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12195789	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12196771	0.83[EUR][1000 genomes]
rs12209948	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12213653	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3105258	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3125276	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078034	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4236121	0.84[EUR][1000 genomes]
rs4236122	0.83[EUR][1000 genomes]
rs4283890	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4289638	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4339456	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398735	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438959	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4518493	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4712085	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4712086	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4712090	0.84[EUR][1000 genomes]
rs4715497	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715498	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715516	0.84[EUR][1000 genomes]
rs62416360	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62416378	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62416416	0.83[EUR][1000 genomes]
rs62416556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906829	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6907460	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6908172	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72975482	0.82[EUR][1000 genomes]
rs72978512	0.84[EUR][1000 genomes]
rs7746448	0.87[AMR][1000 genomes]
rs7755108	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357829	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357831	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9370364	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9382434	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54873800-54874400	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:54874000-54874400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:54874000-54874600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:54874000-54874800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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