Variant report

Variant	rs4713846
Chromosome Location	chr6:35228828-35228829
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35227214..35229292-chr6:35260435..35263392,2	K562	blood:
2	chr6:34202035..34205684-chr6:35227191..35229008,3	K562	blood:
3	chr6:35227857..35229725-chr6:35245132..35247985,2	K562	blood:
4	chr6:35227633..35229883-chr6:35250389..35252972,3	K562	blood:
5	chr11:62608457..62610625-chr6:35227226..35229917,3	K562	blood:
6	chr6:35227208..35228940-chr6:35464081..35465836,2	K562	blood:
7	chr6:35226066..35229330-chr6:35434346..35438215,4	K562	blood:
8	chr6:34856224..34858095-chr6:35226235..35229197,2	MCF-7	breast:
9	chr6:34854986..34858344-chr6:35226281..35229493,3	K562	blood:
10	chr6:35228241..35230981-chr6:35457144..35459454,2	K562	blood:
11	chr6:35227094..35229802-chr6:35433183..35436613,4	K562	blood:
12	chr6:35227789..35229882-chr6:35245132..35248269,3	K562	blood:
13	chr6:35227851..35229511-chr6:35235858..35238683,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction
ENSG00000064995	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000064999	Chromatin interaction
ENSG00000007866	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000217004	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4713842	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs4713843	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs4713854	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs707969	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs72896255	1.00[AFR][1000 genomes]
rs72896273	1.00[AFR][1000 genomes]
rs72898264	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72909084	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs734538	0.81[EUR][1000 genomes]
rs763155	0.81[EUR][1000 genomes]
rs7767150	0.81[EUR][1000 genomes]
rs9394282	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228000-35229000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:35228000-35229000	Flanking Active TSS	Dnd41	blood
3	chr6:35228000-35229000	Flanking Active TSS	Hela-S3	cervix
4	chr6:35228000-35229200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:35228000-35229600	Flanking Active TSS	K562	blood
6	chr6:35228200-35229000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:35228200-35229000	Enhancers	Fetal Brain Male	brain
8	chr6:35228200-35229000	Enhancers	Gastric	stomach
9	chr6:35228200-35229000	Enhancers	Small Intestine	intestine
10	chr6:35228200-35229000	Enhancers	Thymus	Thymus
11	chr6:35228200-35229200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:35228200-35234400	Weak transcription	Lung	lung
13	chr6:35228200-35235000	Weak transcription	Ovary	ovary
14	chr6:35228200-35243000	Weak transcription	Aorta	Aorta
15	chr6:35228400-35229000	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:35228400-35229000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:35228400-35229000	Enhancers	Liver	Liver
18	chr6:35228400-35229000	Enhancers	Brain Angular Gyrus	brain
19	chr6:35228400-35229000	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:35228400-35229000	Enhancers	Psoas Muscle	Psoas
21	chr6:35228400-35229000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr6:35228400-35229200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:35228400-35229200	Enhancers	Primary T cells from cord blood	blood
24	chr6:35228400-35229200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr6:35228400-35229200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:35228400-35229200	Enhancers	Fetal Kidney	kidney
27	chr6:35228400-35229200	Enhancers	Pancreas	Pancrea
28	chr6:35228400-35229400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr6:35228400-35229600	Enhancers	Primary B cells from peripheral blood	blood
30	chr6:35228400-35230200	Weak transcription	Esophagus	oesophagus
31	chr6:35228400-35230800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr6:35228400-35231400	Weak transcription	Stomach Mucosa	stomach
33	chr6:35228400-35232200	Enhancers	Fetal Heart	heart
34	chr6:35228400-35236000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:35228400-35247800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:35228400-35248000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:35228600-35229000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:35228600-35229000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr6:35228600-35229000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:35228600-35229000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:35228600-35229000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:35228600-35229000	Enhancers	Brain Cingulate Gyrus	brain
44	chr6:35228600-35229000	Enhancers	Brain Hippocampus Middle	brain
45	chr6:35228600-35229000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:35228600-35229000	Enhancers	Fetal Intestine Small	intestine
47	chr6:35228600-35229200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:35228600-35229200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr6:35228600-35229200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:35228600-35229200	Enhancers	Adipose Nuclei	Adipose

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