Variant report

Variant	rs72909084
Chromosome Location	chr6:35207032-35207033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35195154..35200305-chr6:35202213..35207133,5	K562	blood:
2	chr6:35132640..35135454-chr6:35205817..35208602,3	MCF-7	breast:
3	chr6:35188260..35190147-chr6:35205667..35207207,2	K562	blood:
4	chr6:35203262..35205063-chr6:35205452..35207429,2	K562	blood:
5	chr6:35205769..35207687-chr6:35225072..35226945,2	K562	blood:

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4713846	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4713854	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72896255	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72896273	1.00[AFR][1000 genomes]
rs72898264	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35182400-35209000	Weak transcription	A549	lung
2	chr6:35186400-35212000	Weak transcription	NHDF-Ad	bronchial
3	chr6:35186800-35212000	Weak transcription	Dnd41	blood
4	chr6:35190200-35212000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:35191200-35212000	Weak transcription	Primary T cells from cord blood	blood
6	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:35192200-35211400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:35194000-35209400	Weak transcription	Thymus	Thymus
9	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:35195600-35210600	Weak transcription	Spleen	Spleen
11	chr6:35199200-35211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:35199200-35212200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:35199400-35208800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:35199400-35209200	Weak transcription	Adipose Nuclei	Adipose
15	chr6:35199400-35211800	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:35199400-35212000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:35199400-35216200	Weak transcription	Brain Substantia Nigra	brain
18	chr6:35199600-35209800	Weak transcription	Gastric	stomach
19	chr6:35199600-35210400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:35199600-35211200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:35199600-35215600	Weak transcription	Hela-S3	cervix
22	chr6:35199600-35226600	Weak transcription	Esophagus	oesophagus
23	chr6:35199800-35212200	Weak transcription	HepG2	liver
24	chr6:35199800-35226200	Weak transcription	Pancreas	Pancrea
25	chr6:35200600-35225000	Weak transcription	Fetal Brain Male	brain
26	chr6:35201400-35226200	Weak transcription	Stomach Mucosa	stomach
27	chr6:35201600-35211800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:35202600-35225800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:35203400-35226000	Weak transcription	HSMMtube	muscle
30	chr6:35203600-35210600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:35204000-35208400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
32	chr6:35204000-35209000	Enhancers	Left Ventricle	heart
33	chr6:35204200-35208400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
34	chr6:35204400-35207400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:35204400-35215400	Weak transcription	GM12878-XiMat	blood
36	chr6:35204600-35207400	Enhancers	Placenta Amnion	Placenta Amnion
37	chr6:35204600-35207800	Weak transcription	NHEK	skin
38	chr6:35204600-35208000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
39	chr6:35204600-35208600	Genic enhancers	Fetal Stomach	stomach
40	chr6:35204800-35207800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:35205000-35207400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:35205000-35207800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:35205200-35207800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:35205200-35208000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:35205400-35207600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
46	chr6:35205400-35207600	Enhancers	Fetal Lung	lung
47	chr6:35205400-35208200	Enhancers	Primary hematopoietic stem cells	blood
48	chr6:35205400-35208200	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr6:35205400-35208400	Enhancers	Fetal Intestine Small	intestine
50	chr6:35205400-35208400	Enhancers	Lung	lung

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