Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:35886673..35889713-chr6:35902672..35907907,4	K562	blood:
2	chr6:35887234..35890307-chr6:35907014..35910421,3	MCF-7	breast:
3	chr6:35886956..35891335-chr6:35900766..35907907,8	K562	blood:

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2038961	0.88[EUR][1000 genomes]
rs2766522	0.86[EUR][1000 genomes]
rs2766527	0.86[EUR][1000 genomes]
rs2766528	0.87[EUR][1000 genomes]
rs2859420	0.89[EUR][1000 genomes]
rs3761981	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs608267	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs612262	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs619264	0.81[EUR][1000 genomes]
rs638600	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651158	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661337	0.81[EUR][1000 genomes]
rs6909895	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6920616	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6920862	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6933241	0.89[EUR][1000 genomes]
rs7755022	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs879493	0.88[EUR][1000 genomes]
rs879667	0.86[EUR][1000 genomes]
rs9470134	0.88[EUR][1000 genomes]
rs9470171	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35890400-35930200	Weak transcription	Pancreas	Pancrea
2	chr6:35906400-35909400	Enhancers	HepG2	liver

Quick Search: