Variant report

Variant	rs3761981
Chromosome Location	chr6:35840091-35840092
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35838793..35840397-chr6:35843278..35846041,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1049649	0.85[CEU][hapmap]
rs10947572	0.83[CEU][hapmap]
rs10947574	0.81[EUR][1000 genomes]
rs1160827	0.80[EUR][1000 genomes]
rs1160828	0.86[CEU][hapmap]
rs11755072	0.86[CEU][hapmap]
rs1326752	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs17653835	0.85[CEU][hapmap]
rs17654270	0.81[EUR][1000 genomes]
rs17705020	0.85[CEU][hapmap]
rs2038961	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2051647	0.86[CEU][hapmap];0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs2148533	0.81[EUR][1000 genomes]
rs2250151	0.80[EUR][1000 genomes]
rs2301510	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs2395638	0.80[EUR][1000 genomes]
rs2395640	0.86[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs2766522	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2766527	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2766528	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2817027	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs2859420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3213580	0.87[CEU][hapmap]
rs3891863	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs3997732	0.80[EUR][1000 genomes]
rs4340986	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs4713929	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59190698	0.81[EUR][1000 genomes]
rs608267	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs612262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs638600	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs639421	0.85[CEU][hapmap]
rs6457858	0.82[CEU][hapmap]
rs6457862	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs6457864	0.81[EUR][1000 genomes]
rs651158	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs662713	0.83[CEU][hapmap]
rs677937	0.85[CEU][hapmap]
rs6908433	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs6909895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6910906	0.80[EUR][1000 genomes]
rs6911849	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6916941	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs6920616	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6920862	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6923015	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs6926156	0.81[EUR][1000 genomes]
rs6929493	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs6931888	0.83[CEU][hapmap]
rs6932973	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs6933241	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs721694	0.80[EUR][1000 genomes]
rs7740886	0.82[CEU][hapmap]
rs7749862	0.81[EUR][1000 genomes]
rs7752545	0.86[CEU][hapmap];0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs7752551	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs7755022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755600	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs7774060	0.80[EUR][1000 genomes]
rs879493	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs879667	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9296168	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs9462128	0.85[CEU][hapmap]
rs9462131	0.80[EUR][1000 genomes]
rs9462132	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9462133	0.80[EUR][1000 genomes]
rs9462134	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs9462135	0.86[CEU][hapmap];0.86[CHB][hapmap];0.80[EUR][1000 genomes]
rs9462141	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs9462143	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs9462144	0.80[EUR][1000 genomes]
rs9470120	0.85[CEU][hapmap]
rs9470121	0.86[CEU][hapmap]
rs9470126	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9470131	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9470134	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470136	0.80[EUR][1000 genomes]
rs9470138	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9470139	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9470140	0.81[EUR][1000 genomes]
rs9470141	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs9470142	0.81[EUR][1000 genomes]
rs9470144	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs9470147	0.85[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs9470151	0.80[EUR][1000 genomes]
rs9470152	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs9470153	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs9470154	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs9470155	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9470156	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9470161	0.80[EUR][1000 genomes]
rs9470162	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9470166	0.80[EUR][1000 genomes]
rs9470167	0.80[EUR][1000 genomes]
rs9470169	0.80[EUR][1000 genomes]
rs9470171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470172	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:35801000-35840600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:35801200-35849000	Strong transcription	Dnd41	blood
5	chr6:35804400-35849000	Strong transcription	K562	blood
6	chr6:35806800-35844800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
8	chr6:35812400-35850200	Weak transcription	Stomach Mucosa	stomach
9	chr6:35815800-35840600	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr6:35816800-35844000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:35817000-35859000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:35817400-35848200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:35821800-35841200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr6:35824400-35858400	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:35824400-35863800	Weak transcription	Right Ventricle	heart
16	chr6:35824800-35847200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:35825200-35848600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:35825200-35874600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:35825400-35856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:35826200-35840600	Strong transcription	Primary hematopoietic stem cells	blood
22	chr6:35826400-35858800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:35826800-35844400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:35827000-35858800	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:35831200-35840200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:35831600-35841200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:35831800-35844600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:35832000-35856800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:35832200-35841000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr6:35832200-35843800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:35832800-35847400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:35833600-35848600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr6:35833800-35840600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:35834000-35840600	Strong transcription	Fetal Thymus	thymus
35	chr6:35834000-35848600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr6:35834200-35840400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:35834200-35840400	Strong transcription	Placenta	Placenta
38	chr6:35834200-35842800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:35834400-35840400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:35834400-35840800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr6:35834400-35840800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:35834400-35840800	Strong transcription	Liver	Liver
43	chr6:35834400-35848200	Strong transcription	HepG2	liver
44	chr6:35834400-35848800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr6:35834600-35840600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:35834600-35841200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:35834800-35840200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr6:35834800-35840600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:35834800-35841000	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:35835000-35865400	Weak transcription	Spleen	Spleen

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