Variant report

Variant	rs1160827
Chromosome Location	chr6:35883941-35883942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35882546..35884766-chr6:35887461..35889356,3	MCF-7	breast:
2	chr6:35848200..35851472-chr6:35882054..35884920,3	K562	blood:

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10484264	0.87[EUR][1000 genomes]
rs1049649	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10947572	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10947574	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10947576	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1160828	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11751893	0.81[EUR][1000 genomes]
rs11755428	0.83[EUR][1000 genomes]
rs11964319	0.83[EUR][1000 genomes]
rs11968149	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12528878	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1326752	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1326753	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1326756	0.89[EUR][1000 genomes]
rs17653835	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17654270	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17705020	0.96[EUR][1000 genomes]
rs1887170	0.84[EUR][1000 genomes]
rs2038962	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2051647	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2148533	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2182546	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2250151	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2301510	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2395638	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2395640	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2395641	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2395643	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2395644	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2395645	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2395646	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2817027	0.86[EUR][1000 genomes]
rs3761981	0.80[EUR][1000 genomes]
rs3891863	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3997732	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4340986	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs582526	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59190698	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs595591	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs613540	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs619264	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs637661	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs639421	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs640867	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs644229	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457858	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6457859	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6457860	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6457862	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6457864	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs657036	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs659532	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs661337	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs661658	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs662713	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs668438	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs671992	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs675664	0.91[EUR][1000 genomes]
rs677937	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6905144	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6906455	0.85[EUR][1000 genomes]
rs6908433	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6910260	0.84[EUR][1000 genomes]
rs6910906	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6911849	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6916941	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6920616	0.81[EUR][1000 genomes]
rs6920862	0.81[EUR][1000 genomes]
rs6921531	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6922695	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6923015	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6923312	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6926156	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6929493	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6931888	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6932973	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6933287	0.93[EUR][1000 genomes]
rs721694	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72919002	0.86[EUR][1000 genomes]
rs7740886	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7741794	0.83[EUR][1000 genomes]
rs7744924	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7749862	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7752545	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7752551	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7755022	0.81[EUR][1000 genomes]
rs7755600	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7758042	0.87[EUR][1000 genomes]
rs7763752	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7774060	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7776342	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs879668	0.86[EUR][1000 genomes]
rs9296166	0.93[EUR][1000 genomes]
rs9296168	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462125	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462127	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462128	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9462131	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9462132	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9462133	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9462134	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9462135	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9462136	0.88[EUR][1000 genomes]
rs9462141	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9462143	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9462144	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470111	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470118	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470119	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470120	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470121	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470122	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470123	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470124	0.91[EUR][1000 genomes]
rs9470125	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470126	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470130	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470131	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470136	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470138	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470139	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470140	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470141	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470142	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470144	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470147	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9470151	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470152	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470153	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470154	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470155	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9470156	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9470157	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470161	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9470162	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9470166	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470167	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470169	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470171	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9470172	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9470173	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:35837400-35887000	Weak transcription	Psoas Muscle	Psoas
3	chr6:35837400-35887400	Weak transcription	Gastric	stomach
4	chr6:35837800-35886800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:35838600-35887400	Weak transcription	Small Intestine	intestine
6	chr6:35838800-35885000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:35849200-35885400	Weak transcription	NHDF-Ad	bronchial
8	chr6:35856600-35885400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:35856800-35885000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:35856800-35885400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:35863600-35887000	Weak transcription	Pancreas	Pancrea
12	chr6:35868600-35886800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:35868600-35887000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:35872200-35886800	Weak transcription	HSMMtube	muscle
15	chr6:35874000-35887400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:35874600-35887400	Weak transcription	Ovary	ovary
17	chr6:35875400-35885000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:35877200-35886800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:35877400-35886800	Weak transcription	Colonic Mucosa	Colon
20	chr6:35877600-35884200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:35877600-35887000	Weak transcription	Esophagus	oesophagus
22	chr6:35877600-35887000	Weak transcription	Right Ventricle	heart
23	chr6:35877600-35887400	Weak transcription	Lung	lung
24	chr6:35877800-35885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:35878000-35885000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:35878000-35886400	Weak transcription	Fetal Heart	heart
27	chr6:35878400-35886800	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:35878400-35886800	Weak transcription	NHLF	lung
29	chr6:35878400-35887600	Weak transcription	Spleen	Spleen
30	chr6:35878600-35884000	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr6:35878600-35884000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:35878600-35887000	Weak transcription	Adipose Nuclei	Adipose
33	chr6:35878800-35884400	Strong transcription	K562	blood
34	chr6:35878800-35886400	Weak transcription	Brain Anterior Caudate	brain
35	chr6:35879000-35885000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:35879000-35885000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:35879000-35885000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:35879000-35885600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:35879000-35886000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:35879200-35884000	Strong transcription	HepG2	liver
41	chr6:35879200-35885600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:35879200-35885600	Weak transcription	Fetal Kidney	kidney
43	chr6:35879200-35886000	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:35879200-35886200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:35879200-35886200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:35879200-35886600	Weak transcription	HSMM	muscle
47	chr6:35879200-35886800	Weak transcription	Stomach Mucosa	stomach
48	chr6:35879400-35885400	Weak transcription	Primary B cells from cord blood	blood
49	chr6:35879400-35887000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:35879600-35884000	Strong transcription	H1 Cell Line	embryonic stem cell

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