Variant report

Variant	rs659532
Chromosome Location	chr6:35887273-35887274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35886849..35889245-chr6:35993978..35995751,2	MCF-7	breast:
2	chr6:35860038..35862561-chr6:35885044..35887926,2	K562	blood:
3	chr6:35885785..35888471-chr6:35920108..35922574,2	K562	blood:
4	chr14:64970728..64971278-chr6:35887063..35888020,2	Hela-S3	cervix:
5	chr6:35838681..35841453-chr6:35887224..35888776,2	K562	blood:
6	chr6:35825264..35827531-chr6:35887069..35888745,2	K562	blood:
7	chr6:35886000..35887918-chr6:36163622..36165328,2	K562	blood:

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction
ENSG00000096063	Chromatin interaction
ENSG00000246982	Chromatin interaction
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10484264	0.84[EUR][1000 genomes]
rs1049649	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10947572	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10947574	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10947576	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1160827	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1160828	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11751893	0.83[EUR][1000 genomes]
rs11755428	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11964319	0.82[EUR][1000 genomes]
rs11968149	0.91[EUR][1000 genomes]
rs12528878	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1326752	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1326753	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1326756	0.87[EUR][1000 genomes]
rs17653835	0.94[EUR][1000 genomes]
rs17654270	0.95[EUR][1000 genomes]
rs17705020	0.94[EUR][1000 genomes]
rs1887170	0.82[EUR][1000 genomes]
rs2038962	0.91[EUR][1000 genomes]
rs2051647	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2148533	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2182546	0.92[EUR][1000 genomes]
rs2250151	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2301510	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2395638	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2395640	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2395641	0.88[EUR][1000 genomes]
rs2395643	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2395644	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2395645	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2395646	0.87[EUR][1000 genomes]
rs2817027	0.84[EUR][1000 genomes]
rs3891863	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3997732	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4340986	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs582526	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59190698	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs595591	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs613540	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs619264	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs637661	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs639421	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs640867	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs644229	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6457858	0.91[EUR][1000 genomes]
rs6457859	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6457860	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6457862	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6457864	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs657036	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs661337	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs661658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662713	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs668438	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs671992	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs675664	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs677937	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6905144	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6906455	0.83[EUR][1000 genomes]
rs6908433	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6910260	0.83[EUR][1000 genomes]
rs6910906	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6911849	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6916941	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6921531	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6922695	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6923015	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6923312	0.86[EUR][1000 genomes]
rs6926156	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6929493	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6931888	0.91[EUR][1000 genomes]
rs6932973	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6933287	0.91[EUR][1000 genomes]
rs721694	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72919002	0.83[EUR][1000 genomes]
rs7740886	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7741794	0.81[EUR][1000 genomes]
rs7744924	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7749862	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7752545	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7752551	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7755600	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7758042	0.85[EUR][1000 genomes]
rs7763752	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7774060	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7776342	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs879668	0.85[EUR][1000 genomes]
rs9296166	0.91[EUR][1000 genomes]
rs9296168	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9462125	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9462127	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9462128	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9462131	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462132	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462133	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462134	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462135	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462136	0.86[EUR][1000 genomes]
rs9462141	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9462143	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9462144	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470111	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9470118	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9470119	0.92[EUR][1000 genomes]
rs9470120	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9470121	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9470122	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9470123	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9470124	0.88[EUR][1000 genomes]
rs9470125	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9470126	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470130	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9470131	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470136	0.94[EUR][1000 genomes]
rs9470138	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470139	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470140	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470141	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470142	0.95[EUR][1000 genomes]
rs9470144	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470147	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470151	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470152	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470153	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470154	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470155	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470156	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470157	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470161	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470162	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470166	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470167	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470169	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9470171	0.81[EUR][1000 genomes]
rs9470172	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9470173	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35837400-35887400	Weak transcription	Gastric	stomach
2	chr6:35838600-35887400	Weak transcription	Small Intestine	intestine
3	chr6:35874000-35887400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:35874600-35887400	Weak transcription	Ovary	ovary
5	chr6:35877600-35887400	Weak transcription	Lung	lung
6	chr6:35878400-35887600	Weak transcription	Spleen	Spleen
7	chr6:35880800-35887400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:35880800-35887400	Weak transcription	Left Ventricle	heart
9	chr6:35881400-35887400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:35882400-35887400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:35884200-35887400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:35885000-35887400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:35885000-35887800	Transcr. at gene 5' and 3'	K562	blood
14	chr6:35885000-35888200	Transcr. at gene 5' and 3'	Dnd41	blood
15	chr6:35885600-35887400	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:35886000-35889200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:35886000-35889200	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr6:35886000-35889800	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr6:35886000-35890000	Active TSS	GM12878-XiMat	blood
20	chr6:35886200-35887800	Flanking Active TSS	Fetal Brain Female	brain
21	chr6:35886200-35888200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr6:35886200-35888400	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr6:35886200-35889400	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr6:35886200-35889600	Active TSS	Fetal Intestine Large	intestine
25	chr6:35886400-35887400	Enhancers	Fetal Heart	heart
26	chr6:35886400-35887600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:35886400-35887600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:35886400-35888000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:35886400-35888000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:35886400-35888200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
31	chr6:35886400-35888200	Flanking Active TSS	HUVEC	blood vessel
32	chr6:35886400-35888400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:35886400-35888400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:35886400-35888400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:35886400-35889400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:35886400-35889400	Active TSS	Brain Anterior Caudate	brain
37	chr6:35886400-35889600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:35886400-35889600	Active TSS	Brain Cingulate Gyrus	brain
39	chr6:35886400-35889600	Active TSS	HMEC	breast
40	chr6:35886400-35890400	Active TSS	A549	lung
41	chr6:35886600-35887400	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr6:35886600-35887400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:35886600-35887600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr6:35886600-35888000	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr6:35886600-35888200	Flanking Active TSS	Primary B cells from cord blood	blood
46	chr6:35886600-35888200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:35886600-35889000	Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr6:35886600-35889200	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr6:35886600-35889600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:35886800-35887400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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