Variant report

Variant	rs11755428
Chromosome Location	chr6:35900277-35900278
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35892514..35894621-chr6:35899098..35901884,2	MCF-7	breast:
2	chr6:35899256..35901822-chr6:35903636..35906600,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10484264	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs10947574	0.81[EUR][1000 genomes]
rs10947576	0.82[EUR][1000 genomes]
rs1160827	0.83[EUR][1000 genomes]
rs1160828	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11751893	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11964319	0.84[EUR][1000 genomes]
rs12528878	0.81[EUR][1000 genomes]
rs1326752	0.81[EUR][1000 genomes]
rs1326756	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs17654270	0.81[EUR][1000 genomes]
rs1887170	0.84[EUR][1000 genomes]
rs2051647	0.80[EUR][1000 genomes]
rs2148533	0.81[EUR][1000 genomes]
rs2250151	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2301510	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2395638	0.80[EUR][1000 genomes]
rs2395640	0.81[EUR][1000 genomes]
rs2395641	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2395645	0.80[EUR][1000 genomes]
rs2395646	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3891863	0.81[EUR][1000 genomes]
rs3997732	0.82[EUR][1000 genomes]
rs4340986	0.80[EUR][1000 genomes]
rs582526	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59190698	0.81[EUR][1000 genomes]
rs595591	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs613540	0.84[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs619264	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs637661	0.87[EUR][1000 genomes]
rs639421	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs640867	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs644229	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6457862	0.80[EUR][1000 genomes]
rs6457864	0.81[EUR][1000 genomes]
rs657036	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs659532	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs661337	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs661658	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs662713	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs668438	0.87[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs671992	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs677937	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6908433	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6910906	0.80[EUR][1000 genomes]
rs6911849	0.81[EUR][1000 genomes]
rs6916941	0.81[EUR][1000 genomes]
rs6921531	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6923312	0.88[EUR][1000 genomes]
rs6926156	0.81[EUR][1000 genomes]
rs6929493	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6932973	0.80[EUR][1000 genomes]
rs721694	0.80[EUR][1000 genomes]
rs72919002	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7749862	0.81[EUR][1000 genomes]
rs7752545	0.80[EUR][1000 genomes]
rs7752551	0.80[EUR][1000 genomes]
rs7755600	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7758042	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs7763752	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7774060	0.80[EUR][1000 genomes]
rs9462131	0.80[EUR][1000 genomes]
rs9462132	0.80[EUR][1000 genomes]
rs9462133	0.80[EUR][1000 genomes]
rs9462134	0.80[EUR][1000 genomes]
rs9462135	0.80[EUR][1000 genomes]
rs9462136	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs9462141	0.81[EUR][1000 genomes]
rs9462143	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9462144	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470126	0.80[EUR][1000 genomes]
rs9470131	0.80[EUR][1000 genomes]
rs9470136	0.80[EUR][1000 genomes]
rs9470138	0.80[EUR][1000 genomes]
rs9470139	0.80[EUR][1000 genomes]
rs9470140	0.81[EUR][1000 genomes]
rs9470141	0.81[EUR][1000 genomes]
rs9470142	0.81[EUR][1000 genomes]
rs9470144	0.81[EUR][1000 genomes]
rs9470147	0.81[EUR][1000 genomes]
rs9470152	0.81[EUR][1000 genomes]
rs9470153	0.81[EUR][1000 genomes]
rs9470154	0.81[EUR][1000 genomes]
rs9470155	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9470156	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9470157	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9470161	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9470162	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9470166	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470167	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470169	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470172	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9470173	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35889800-35901600	Weak transcription	Psoas Muscle	Psoas
2	chr6:35890400-35930200	Weak transcription	Pancreas	Pancrea
3	chr6:35891000-35900400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:35899400-35904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:35899600-35901600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:35900000-35900600	Active TSS	Primary T cells from cord blood	blood
7	chr6:35900200-35900400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:35900200-35900400	Enhancers	Lung	lung

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