Variant report

Variant	rs9470142
Chromosome Location	chr6:35825489-35825490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35824380..35827322-chr6:35835824..35839323,3	K562	blood:
2	chr6:35823787..35826457-chr6:35828156..35831044,2	MCF-7	breast:
3	chr6:35824710..35826537-chr6:35841817..35843678,2	K562	blood:
4	chr6:35825264..35827531-chr6:35887069..35888745,2	K562	blood:
5	chr6:35824538..35827257-chr6:35828919..35831543,3	K562	blood:
6	chr6:35815420..35817910-chr6:35822708..35825554,2	K562	blood:

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10484264	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1049649	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947572	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10947574	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947576	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1160827	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1160828	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11755428	0.81[EUR][1000 genomes]
rs11964319	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11968149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12528878	0.98[EUR][1000 genomes]
rs1326752	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326753	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1326756	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17653835	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17654270	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17705020	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1887170	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2038962	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2051647	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2148533	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2182546	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2250151	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2301510	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2395638	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2395640	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2395641	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395643	0.95[EUR][1000 genomes]
rs2395644	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2395645	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2395646	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2766520	0.80[ASN][1000 genomes]
rs2766521	0.80[ASN][1000 genomes]
rs2766525	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2817022	0.80[ASN][1000 genomes]
rs2817023	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2817027	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3761981	0.81[EUR][1000 genomes]
rs3891863	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3997732	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4340986	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs582526	0.85[EUR][1000 genomes]
rs59190698	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs595591	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60467728	0.92[ASN][1000 genomes]
rs60696013	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs613540	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs619264	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs637661	0.92[EUR][1000 genomes]
rs639421	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs640867	0.82[EUR][1000 genomes]
rs644229	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6457857	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6457858	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457859	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457860	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6457862	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457864	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs657036	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs659532	0.95[EUR][1000 genomes]
rs661337	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs661658	0.95[EUR][1000 genomes]
rs662713	0.95[EUR][1000 genomes]
rs668438	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs671992	0.85[EUR][1000 genomes]
rs675664	0.89[EUR][1000 genomes]
rs677937	0.95[EUR][1000 genomes]
rs6905144	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906455	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6908433	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6909895	0.80[EUR][1000 genomes]
rs6910260	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6910906	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911849	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916941	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920862	0.80[EUR][1000 genomes]
rs6921531	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6922695	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6923015	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6923312	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6926156	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929493	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6931888	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6932973	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6933287	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs721694	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72919002	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7740886	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7741794	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7744924	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7749862	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752545	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7752551	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755022	0.80[EUR][1000 genomes]
rs7755600	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7758042	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7763752	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7774060	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7776342	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs879668	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs880062	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296166	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296168	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462122	0.92[ASN][1000 genomes]
rs9462125	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462127	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462128	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462131	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462132	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462133	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462134	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462135	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462136	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462141	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462143	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462144	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9470111	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470118	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470119	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470120	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470121	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470122	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470123	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9470124	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470125	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470126	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470130	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470131	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470136	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470138	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470139	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470140	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470141	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470144	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470147	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9470151	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470152	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470153	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470154	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470155	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470156	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470157	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470161	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470162	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470166	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470167	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470169	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470171	0.82[EUR][1000 genomes]
rs9470172	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470173	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35799600-35837200	Weak transcription	Fetal Kidney	kidney
3	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:35801000-35832600	Strong transcription	Fetal Thymus	thymus
5	chr6:35801000-35840600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:35801200-35826400	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:35801200-35837200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:35801200-35849000	Strong transcription	Dnd41	blood
9	chr6:35801400-35832400	Strong transcription	HepG2	liver
10	chr6:35801800-35827800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:35801800-35828800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:35803200-35828800	Weak transcription	Pancreas	Pancrea
13	chr6:35804400-35849000	Strong transcription	K562	blood
14	chr6:35806800-35844800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
16	chr6:35812400-35850200	Weak transcription	Stomach Mucosa	stomach
17	chr6:35813400-35833000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:35815000-35825600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:35815200-35829400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:35815600-35831200	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr6:35815800-35840600	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr6:35816000-35825600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:35816000-35831200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr6:35816200-35832400	Strong transcription	Hela-S3	cervix
25	chr6:35816400-35826600	Strong transcription	Placenta	Placenta
26	chr6:35816400-35830200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr6:35816600-35829200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:35816800-35830200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:35816800-35831600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:35816800-35836400	Weak transcription	Psoas Muscle	Psoas
31	chr6:35816800-35844000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:35817000-35826000	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:35817000-35826000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:35817000-35828800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:35817000-35859000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:35817200-35827800	Strong transcription	GM12878-XiMat	blood
37	chr6:35817200-35829000	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:35817400-35826400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:35817400-35839200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:35817400-35848200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:35817600-35825800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:35817600-35831000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:35818000-35831400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:35818600-35825600	Strong transcription	HSMM	muscle
45	chr6:35819000-35839800	Weak transcription	Fetal Heart	heart
46	chr6:35819800-35829000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:35819800-35830400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr6:35819800-35831200	Strong transcription	Liver	Liver
49	chr6:35820200-35832800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:35820400-35825600	Strong transcription	Brain Germinal Matrix	brain

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