Variant report

Variant	rs2817027
Chromosome Location	chr6:35778719-35778720
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:35778694-35779482	A549	lung:	n/a	n/a
2	GABPA	chr6:35778620-35779624	A549	lung:	n/a	n/a
3	POLR2A	chr6:35778691-35779627	HCT-116	colon:	n/a	n/a
4	GABPA	chr6:35778697-35779388	Hela-S3	cervix:	n/a	n/a
5	GATA3	chr6:35778705-35779431	A549	lung:	n/a	n/a
6	POLR2A	chr6:35778699-35779774	HCT-116	colon:	n/a	n/a
7	POLR2A	chr6:35778694-35779617	HCT-116	colon:	n/a	n/a
8	TCF12	chr6:35778677-35779469	A549	lung:	n/a	n/a
9	ELF1	chr6:35778664-35779431	MCF-7	breast:	n/a	n/a
10	ELF1	chr6:35778690-35779379	K562	blood:	n/a	n/a
11	NR2C2	chr6:35778677-35779518	Hela-S3	cervix:	n/a	chr6:35779482-35779491 chr6:35779355-35779364 chr6:35779360-35779369
12	GABPA	chr6:35778646-35779091	A549	lung:	n/a	n/a

Variant related genes	Relation type
LHFPL5	TF binding region

Extended variants
information (count: 163 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10484264	0.84[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1049649	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10947572	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10947574	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10947576	0.86[EUR][1000 genomes]
rs1160827	0.86[EUR][1000 genomes]
rs1160828	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs11755072	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs11964319	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11968149	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12528878	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1326752	0.96[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1326753	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1326756	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs17653835	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17654270	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17705020	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1887170	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2038962	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2051647	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2148533	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2182546	0.90[EUR][1000 genomes]
rs2250151	0.87[EUR][1000 genomes]
rs2301510	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs2395638	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2395640	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2395641	0.84[CEU][hapmap]
rs2395643	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2395644	0.85[EUR][1000 genomes]
rs2395645	0.85[EUR][1000 genomes]
rs2395646	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs2766519	0.88[EUR][1000 genomes]
rs2766520	0.89[EUR][1000 genomes]
rs2766521	0.90[EUR][1000 genomes]
rs2766522	0.82[EUR][1000 genomes]
rs2766525	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2817022	0.89[EUR][1000 genomes]
rs2817023	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2859420	0.82[CEU][hapmap];0.86[CHB][hapmap];0.87[GIH][hapmap]
rs3213580	0.95[CEU][hapmap]
rs3761981	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs3891863	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3997732	0.87[EUR][1000 genomes]
rs4340986	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs582526	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs59190698	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs595591	0.84[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap]
rs60467728	0.80[ASN][1000 genomes]
rs60696013	0.80[ASN][1000 genomes]
rs612262	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs613540	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs619264	0.82[EUR][1000 genomes]
rs637661	0.81[EUR][1000 genomes]
rs638600	0.86[CHB][hapmap]
rs639421	0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs644229	0.84[EUR][1000 genomes]
rs6457857	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6457858	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6457859	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6457860	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457862	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6457864	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs651158	0.86[CHB][hapmap]
rs659532	0.84[EUR][1000 genomes]
rs661337	0.82[EUR][1000 genomes]
rs661658	0.84[EUR][1000 genomes]
rs662713	0.92[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs668438	0.84[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap]
rs671992	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs677937	0.96[CEU][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs6905144	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6908433	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs6909895	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs6910260	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910906	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6911849	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6916941	0.95[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6921531	0.85[EUR][1000 genomes]
rs6922695	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6923015	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6926156	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6929493	0.96[CEU][hapmap];0.92[CHB][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6931888	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6932973	0.96[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6933287	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs721694	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7740886	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7741794	0.88[ASN][1000 genomes]
rs7744924	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7749862	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7752545	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7752551	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7755022	0.82[CEU][hapmap];0.86[CHB][hapmap];0.87[GIH][hapmap];0.86[LWK][hapmap];0.82[MKK][hapmap]
rs7755600	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs7758042	0.84[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7763752	0.82[JPT][hapmap]
rs7774060	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7776342	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs879493	0.82[CEU][hapmap];0.89[GIH][hapmap]
rs879667	0.82[CEU][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs879668	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs880062	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296166	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9296168	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462122	0.80[ASN][1000 genomes]
rs9462125	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462127	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9462128	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462131	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462132	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462133	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9462134	0.96[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462135	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9462136	0.84[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462141	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9462143	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs9462144	0.86[EUR][1000 genomes]
rs9470111	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470118	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470119	0.89[EUR][1000 genomes]
rs9470120	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470121	0.96[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470122	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470123	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470124	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9470125	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470126	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470130	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470131	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470136	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470138	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470139	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9470140	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9470141	0.96[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9470142	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9470144	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9470147	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9470151	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9470152	0.96[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs9470153	0.96[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9470154	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9470155	0.96[CEU][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs9470156	0.96[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs9470157	0.86[EUR][1000 genomes]
rs9470161	0.87[EUR][1000 genomes]
rs9470162	0.96[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs9470166	0.86[EUR][1000 genomes]
rs9470167	0.86[EUR][1000 genomes]
rs9470169	0.86[EUR][1000 genomes]
rs9470171	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs9470172	0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs9470173	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
6	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv885805	chr6:35685955-35779879	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	esv1791730	chr6:35754783-35805144	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv602939	chr6:35758072-35783497	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2817027	BRPF3	cis	cerebellum	SCAN
rs2817027	SRPK1	cis	parietal	SCAN
rs2817027	C6orf106	cis	cerebellum	SCAN
rs2817027	CDKN1A	cis	cerebellum	SCAN
rs2817027	SRPK1	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35773000-35791400	Weak transcription	Right Atrium	heart
2	chr6:35773400-35778800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:35773800-35778800	Weak transcription	Pancreas	Pancrea
4	chr6:35776200-35785000	Weak transcription	Brain Anterior Caudate	brain
5	chr6:35777000-35778800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:35777000-35778800	Weak transcription	Esophagus	oesophagus
7	chr6:35777000-35782400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:35777000-35801400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:35777800-35779800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:35778600-35778800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:35778600-35778800	Enhancers	A549	lung
12	chr6:35778600-35779400	Enhancers	NH-A	brain
13	chr6:35778600-35779800	Flanking Active TSS	Hela-S3	cervix
14	chr6:35778600-35779800	Enhancers	HMEC	breast
15	chr6:35778600-35779800	Enhancers	HUVEC	blood vessel
16	chr6:35778600-35780200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:35778600-35780400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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