Variant report

Variant	rs651158
Chromosome Location	chr6:35906389-35906390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35899256..35901822-chr6:35903636..35906600,2	K562	blood:
2	chr6:35886673..35889713-chr6:35902672..35907907,4	K562	blood:
3	chr6:35886956..35891335-chr6:35900766..35907907,8	K562	blood:

Variant related genes	Relation type
ENSG00000096063	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1049649	0.81[CEU][hapmap]
rs1160828	0.81[CEU][hapmap]
rs11755072	0.81[CEU][hapmap]
rs1326752	0.81[CEU][hapmap]
rs17653835	0.81[CEU][hapmap]
rs17705020	0.81[CEU][hapmap]
rs2038961	0.88[EUR][1000 genomes]
rs2051647	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs2301510	0.81[CEU][hapmap]
rs2395640	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs2766522	0.86[EUR][1000 genomes]
rs2766527	0.86[EUR][1000 genomes]
rs2766528	0.87[EUR][1000 genomes]
rs2817027	0.86[CHB][hapmap]
rs2859420	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs3213580	0.81[CEU][hapmap]
rs3761981	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3891863	0.81[CEU][hapmap]
rs4340986	0.81[CEU][hapmap]
rs4713929	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595591	0.83[GIH][hapmap]
rs608267	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs612262	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs619264	0.81[EUR][1000 genomes]
rs638600	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639421	0.81[CEU][hapmap]
rs6457862	0.81[CEU][hapmap]
rs661337	0.81[EUR][1000 genomes]
rs668438	0.83[GIH][hapmap]
rs677937	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs6908433	0.81[CEU][hapmap]
rs6909895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6911849	0.81[CEU][hapmap]
rs6916941	0.87[CEU][hapmap]
rs6920616	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6920862	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6923015	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs6929493	0.81[CEU][hapmap]
rs6932973	0.81[CEU][hapmap]
rs6933241	0.89[EUR][1000 genomes]
rs7752545	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs7752551	0.81[CEU][hapmap]
rs7755022	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7755600	0.81[CEU][hapmap]
rs879493	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs879667	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs9296168	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9462128	0.81[CEU][hapmap]
rs9462132	0.81[CEU][hapmap]
rs9462134	0.81[CEU][hapmap]
rs9462135	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9462141	0.81[CEU][hapmap]
rs9462143	0.81[CEU][hapmap]
rs9470120	0.81[CEU][hapmap]
rs9470121	0.81[CEU][hapmap]
rs9470126	0.81[CEU][hapmap]
rs9470131	0.81[CEU][hapmap]
rs9470134	0.88[EUR][1000 genomes]
rs9470138	0.81[CEU][hapmap]
rs9470139	0.81[CEU][hapmap]
rs9470141	0.81[CEU][hapmap]
rs9470144	0.81[CEU][hapmap]
rs9470147	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs9470152	0.81[CEU][hapmap]
rs9470153	0.81[CEU][hapmap]
rs9470154	0.81[CEU][hapmap]
rs9470155	0.81[CEU][hapmap]
rs9470162	0.81[CEU][hapmap]
rs9470171	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470172	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs651158	BRPF3	cis	cerebellum	SCAN
rs651158	CDKN1A	cis	cerebellum	SCAN
rs651158	SRPK1	cis	parietal	SCAN
rs651158	C6orf106	cis	cerebellum	SCAN
rs651158	LHFPL5	cis	parietal	SCAN
rs651158	SRPK1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35890400-35930200	Weak transcription	Pancreas	Pancrea

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