Variant report

Variant	rs644229
Chromosome Location	chr6:35886200-35886201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35830371..35833197-chr6:35885188..35887117,3	K562	blood:
2	chr6:35884385..35886454-chr6:35893224..35895321,2	MCF-7	breast:
3	chr6:35885311..35887036-chr6:36058806..36061539,2	K562	blood:
4	chr6:35860038..35862561-chr6:35885044..35887926,2	K562	blood:
5	chr6:35885785..35888471-chr6:35920108..35922574,2	K562	blood:
6	chr6:35886000..35887918-chr6:36163622..36165328,2	K562	blood:

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction
ENSG00000237719	Chromatin interaction
ENSG00000246982	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10484264	0.84[EUR][1000 genomes]
rs1049649	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10947572	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10947574	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10947576	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1160827	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1160828	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11751893	0.83[EUR][1000 genomes]
rs11755428	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11964319	0.81[EUR][1000 genomes]
rs11968149	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12528878	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1326752	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1326753	0.93[EUR][1000 genomes]
rs1326756	0.86[EUR][1000 genomes]
rs17653835	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17654270	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17705020	0.93[EUR][1000 genomes]
rs1887170	0.82[EUR][1000 genomes]
rs2038962	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2051647	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2148533	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2182546	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2250151	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2301510	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2395638	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2395640	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2395641	0.87[EUR][1000 genomes]
rs2395643	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2395644	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2395645	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2395646	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2817027	0.84[EUR][1000 genomes]
rs3891863	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3997732	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4340986	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs582526	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59190698	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs595591	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs613540	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs619264	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs637661	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs639421	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs640867	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457858	0.90[EUR][1000 genomes]
rs6457859	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6457860	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6457862	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6457864	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs657036	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs659532	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs661337	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs661658	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs662713	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs668438	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs671992	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs675664	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs677937	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6905144	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6906455	0.82[EUR][1000 genomes]
rs6908433	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6910260	0.83[EUR][1000 genomes]
rs6910906	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6911849	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6916941	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6921531	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6922695	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6923015	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6923312	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6926156	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6929493	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6931888	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6932973	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6933287	0.90[EUR][1000 genomes]
rs721694	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72919002	0.83[EUR][1000 genomes]
rs7740886	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7741794	0.80[EUR][1000 genomes]
rs7744924	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7749862	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7752545	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7752551	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7755600	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7758042	0.84[EUR][1000 genomes]
rs7763752	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7774060	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7776342	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs879668	0.84[EUR][1000 genomes]
rs9296166	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9296168	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9462125	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9462127	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9462128	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9462131	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462132	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462133	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462134	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462135	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9462136	0.85[EUR][1000 genomes]
rs9462141	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9462143	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9462144	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9470111	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9470118	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9470119	0.91[EUR][1000 genomes]
rs9470120	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9470121	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9470122	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9470123	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9470124	0.88[EUR][1000 genomes]
rs9470125	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9470126	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470130	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9470131	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470136	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470138	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470139	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470140	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470141	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470142	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470144	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470147	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470151	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470152	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470153	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470154	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470155	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470156	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470157	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9470161	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470162	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9470166	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9470167	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9470169	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9470171	0.80[EUR][1000 genomes]
rs9470172	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470173	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:143 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35837400-35887000	Weak transcription	Psoas Muscle	Psoas
2	chr6:35837400-35887400	Weak transcription	Gastric	stomach
3	chr6:35837800-35886800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:35838600-35887400	Weak transcription	Small Intestine	intestine
5	chr6:35863600-35887000	Weak transcription	Pancreas	Pancrea
6	chr6:35868600-35886800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:35868600-35887000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:35872200-35886800	Weak transcription	HSMMtube	muscle
9	chr6:35874000-35887400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:35874600-35887400	Weak transcription	Ovary	ovary
11	chr6:35877200-35886800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:35877400-35886800	Weak transcription	Colonic Mucosa	Colon
13	chr6:35877600-35887000	Weak transcription	Esophagus	oesophagus
14	chr6:35877600-35887000	Weak transcription	Right Ventricle	heart
15	chr6:35877600-35887400	Weak transcription	Lung	lung
16	chr6:35878000-35886400	Weak transcription	Fetal Heart	heart
17	chr6:35878400-35886800	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:35878400-35886800	Weak transcription	NHLF	lung
19	chr6:35878400-35887600	Weak transcription	Spleen	Spleen
20	chr6:35878600-35887000	Weak transcription	Adipose Nuclei	Adipose
21	chr6:35878800-35886400	Weak transcription	Brain Anterior Caudate	brain
22	chr6:35879200-35886200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:35879200-35886200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:35879200-35886600	Weak transcription	HSMM	muscle
25	chr6:35879200-35886800	Weak transcription	Stomach Mucosa	stomach
26	chr6:35879400-35887000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:35879600-35887000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:35879800-35886800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:35880400-35887000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:35880800-35887200	Weak transcription	Aorta	Aorta
31	chr6:35880800-35887400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:35880800-35887400	Weak transcription	Left Ventricle	heart
33	chr6:35881000-35886600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:35881000-35886800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:35881400-35886400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:35881400-35887400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:35882400-35887400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:35883000-35887000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:35883400-35886200	Weak transcription	Placenta	Placenta
40	chr6:35883600-35886400	Weak transcription	Liver	Liver
41	chr6:35883600-35886600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:35883600-35886800	Weak transcription	Fetal Stomach	stomach
43	chr6:35883600-35887000	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:35883800-35886800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:35884000-35886800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:35884000-35886800	Weak transcription	Fetal Intestine Small	intestine
47	chr6:35884200-35886800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:35884200-35887400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:35884400-35886800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:35884400-35886800	Enhancers	Fetal Brain Male	brain

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