Variant report

Variant	rs2395641
Chromosome Location	chr6:35848806-35848807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35848200..35850000-chr6:35882054..35883840,2	K562	blood:
2	chr6:35848200..35851472-chr6:35882054..35884920,3	K562	blood:
3	chr6:35822709..35825347-chr6:35846934..35849052,2	K562	blood:

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10484264	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1049649	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947572	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10947574	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10947576	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1160827	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1160828	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs11751893	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs11755072	0.89[CEU][hapmap]
rs11755428	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11964319	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11968149	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12528878	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1326752	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1326753	0.88[EUR][1000 genomes]
rs1326756	1.00[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17653835	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17654270	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17705020	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1887170	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2038962	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2051647	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2148533	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2182546	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2250151	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2301510	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2395638	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2395640	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2395643	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2395644	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2395645	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2395646	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2766519	0.85[EUR][1000 genomes]
rs2766520	0.85[EUR][1000 genomes]
rs2766521	0.86[EUR][1000 genomes]
rs2766525	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2817022	0.85[EUR][1000 genomes]
rs2817023	0.88[EUR][1000 genomes]
rs2817027	0.84[CEU][hapmap]
rs3213580	0.87[CEU][hapmap]
rs3891863	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3997732	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340986	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs582526	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59190698	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs595591	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60467728	0.87[ASN][1000 genomes]
rs60696013	0.89[ASN][1000 genomes]
rs613540	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs619264	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs637661	0.85[EUR][1000 genomes]
rs639421	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs640867	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs644229	0.87[EUR][1000 genomes]
rs6457857	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6457858	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457859	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457860	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6457862	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457864	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs657036	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs659532	0.88[EUR][1000 genomes]
rs661337	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs661658	0.88[EUR][1000 genomes]
rs662713	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs668438	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs671992	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs675664	0.82[EUR][1000 genomes]
rs677937	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs6905144	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6906455	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6908433	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6910906	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6911849	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6916941	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6921531	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6922695	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6923015	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6923312	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6926156	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6929493	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6931888	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6932973	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6933287	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs721694	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72919002	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7740886	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7744924	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7749862	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7752545	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7752551	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7755600	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7758042	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7763752	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7774060	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7776342	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs880062	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9296166	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9296168	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9462122	0.87[ASN][1000 genomes]
rs9462125	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9462127	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9462128	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9462131	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9462132	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9462133	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9462134	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9462135	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9462136	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9462141	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9462143	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462144	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9470111	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470118	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470119	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470120	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470121	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470122	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470123	0.88[EUR][1000 genomes]
rs9470124	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470125	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470126	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470130	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470131	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470136	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470138	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470139	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470140	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470141	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470142	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470144	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470147	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9470151	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470152	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470153	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470154	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470155	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470156	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470157	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470161	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470162	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470166	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470167	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470169	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470172	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470173	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35787800-35855600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35800600-35859000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:35801200-35849000	Strong transcription	Dnd41	blood
4	chr6:35804400-35849000	Strong transcription	K562	blood
5	chr6:35807000-35860400	Weak transcription	Brain Angular Gyrus	brain
6	chr6:35812400-35850200	Weak transcription	Stomach Mucosa	stomach
7	chr6:35817000-35859000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:35824400-35858400	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:35824400-35863800	Weak transcription	Right Ventricle	heart
10	chr6:35825000-35885600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:35825200-35874600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:35825400-35856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:35826400-35858800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:35827000-35858800	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:35832000-35856800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:35835000-35865400	Weak transcription	Spleen	Spleen
17	chr6:35835600-35873800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:35837000-35876800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:35837400-35863200	Weak transcription	Pancreas	Pancrea
20	chr6:35837400-35887000	Weak transcription	Psoas Muscle	Psoas
21	chr6:35837400-35887400	Weak transcription	Gastric	stomach
22	chr6:35837600-35849800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:35837600-35854200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:35837600-35855400	Weak transcription	Brain Substantia Nigra	brain
25	chr6:35837800-35850200	Weak transcription	Colonic Mucosa	Colon
26	chr6:35837800-35850200	Weak transcription	Esophagus	oesophagus
27	chr6:35837800-35851800	Weak transcription	NHEK	skin
28	chr6:35837800-35863400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:35837800-35880600	Weak transcription	Aorta	Aorta
30	chr6:35837800-35886800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:35838200-35851400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:35838200-35871400	Weak transcription	HSMMtube	muscle
33	chr6:35838600-35853000	Weak transcription	Osteobl	bone
34	chr6:35838600-35887400	Weak transcription	Small Intestine	intestine
35	chr6:35838800-35885000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr6:35839400-35873000	Weak transcription	NHLF	lung
37	chr6:35841000-35853200	Weak transcription	NH-A	brain
38	chr6:35841200-35850000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:35842000-35850400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:35843600-35850400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr6:35843600-35858800	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:35844200-35853200	Strong transcription	Fetal Thymus	thymus
43	chr6:35845000-35850000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:35845000-35852200	Weak transcription	HUVEC	blood vessel
45	chr6:35846200-35852400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:35846400-35849000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:35846600-35851200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:35846800-35849000	Strong transcription	HSMM	muscle
49	chr6:35846800-35850200	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr6:35847000-35849200	Strong transcription	H1 Cell Line	embryonic stem cell

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