Variant report

Variant	rs4713941
Chromosome Location	chr6:36218219-36218220
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2239798	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs4236049	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4395718	1.00[CEU][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4713940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59200830	0.89[EUR][1000 genomes]
rs9462162	0.81[EUR][1000 genomes]
rs9462165	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs9470226	0.82[CEU][hapmap]
rs9470229	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs9470230	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs9470233	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs9470234	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs9470235	0.88[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36203800-36220200	Weak transcription	Right Atrium	heart
2	chr6:36215600-36220200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:36216000-36220000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:36217400-36220000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:36218000-36219200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:36218200-36222400	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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