Variant report

Variant	rs9470235
Chromosome Location	chr6:36201603-36201604
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36198112..36199990-chr6:36201135..36202981,2	MCF-7	breast:
2	chr6:36197473..36201829-chr6:36205316..36210325,5	MCF-7	breast:
3	chr6:36200507..36203942-chr6:36214708..36217317,3	K562	blood:
4	chr6:36163215..36166247-chr6:36200158..36203502,4	K562	blood:
5	chr6:36191566..36194506-chr6:36199072..36201949,2	MCF-7	breast:
6	chr6:36162586..36164899-chr6:36199631..36203019,4	K562	blood:

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction
ENSG00000246982	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2239798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859129	0.80[CEU][hapmap]
rs2859131	0.80[CEU][hapmap]
rs4236049	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs4395718	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs4713940	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs4713941	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs59200830	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462161	0.89[CEU][hapmap];0.93[JPT][hapmap]
rs9462162	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9462164	0.82[CHB][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes]
rs9462165	0.93[CEU][hapmap];0.88[CHB][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9470222	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9470226	0.88[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs9470229	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9470230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36164400-36203000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36166800-36201800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:36167000-36201800	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:36169400-36201800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:36170000-36201800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:36172200-36202000	Strong transcription	Thymus	Thymus
7	chr6:36172600-36202000	Strong transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:36173400-36202600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:36174000-36204600	Strong transcription	Primary T cells from cord blood	blood
10	chr6:36174200-36201800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr6:36185800-36210600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:36186200-36202600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr6:36189000-36202600	Strong transcription	Fetal Muscle Leg	muscle
14	chr6:36189000-36204800	Strong transcription	Fetal Stomach	stomach
15	chr6:36189200-36202400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:36189600-36201800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:36189600-36201800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:36189600-36204400	Strong transcription	Brain Germinal Matrix	brain
19	chr6:36189800-36202800	Strong transcription	Brain Hippocampus Middle	brain
20	chr6:36189800-36203800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr6:36192200-36203400	Weak transcription	Right Atrium	heart
22	chr6:36192400-36202200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:36193000-36201800	Strong transcription	Adipose Nuclei	Adipose
24	chr6:36193000-36201800	Weak transcription	NHDF-Ad	bronchial
25	chr6:36193000-36202000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:36193000-36202000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:36193400-36201800	Strong transcription	HUVEC	blood vessel
28	chr6:36193400-36202000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:36193800-36206800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:36194200-36201800	Strong transcription	Lung	lung
31	chr6:36194600-36202200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:36194600-36207200	Weak transcription	Fetal Heart	heart
33	chr6:36194800-36201800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:36195000-36201800	Strong transcription	Brain Anterior Caudate	brain
35	chr6:36195200-36204600	Strong transcription	Fetal Brain Female	brain
36	chr6:36195400-36201800	Strong transcription	Ovary	ovary
37	chr6:36196000-36209200	Weak transcription	K562	blood
38	chr6:36196200-36201800	Strong transcription	HSMMtube	muscle
39	chr6:36196200-36202000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:36196200-36202400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr6:36196800-36202000	Strong transcription	Fetal Thymus	thymus
42	chr6:36197000-36202000	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:36197200-36201800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:36197200-36201800	Strong transcription	Spleen	Spleen
45	chr6:36197200-36201800	Weak transcription	HMEC	breast
46	chr6:36197200-36202000	Strong transcription	Placenta	Placenta
47	chr6:36197200-36202000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr6:36197200-36202400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr6:36197400-36201800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr6:36197400-36202800	Weak transcription	Hela-S3	cervix

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