Variant report

Variant	rs9470222
Chromosome Location	chr6:36138898-36138899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2239798	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs2815807	0.83[ASW][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs2859129	0.94[ASW][hapmap];0.93[CEU][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];0.88[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes]
rs2859131	0.94[ASW][hapmap];0.93[CEU][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs2859133	0.86[AFR][1000 genomes]
rs4713933	0.90[AFR][1000 genomes]
rs9394331	0.94[AFR][1000 genomes]
rs9462161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462162	0.82[ASN][1000 genomes]
rs9470226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470229	0.87[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.86[MKK][hapmap]
rs9470230	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9470233	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9470234	0.87[CEU][hapmap];0.93[JPT][hapmap]
rs9470235	0.87[CEU][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9470222	C6orf222	cis	parietal	SCAN
rs9470222	MAPK14	cis	cerebellum	SCAN
rs9470222	MDGA1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36110000-36145000	Weak transcription	Primary T cells from cord blood	blood
2	chr6:36118600-36145800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:36128400-36145800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:36128600-36149800	Weak transcription	Ovary	ovary
5	chr6:36137200-36145600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:36137600-36139200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:36137600-36145600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:36138000-36145000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:36138400-36139400	Weak transcription	GM12878-XiMat	blood
10	chr6:36138600-36139000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:36138600-36139000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:36138600-36139000	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links