Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:36142995..36147240-chr6:36160438..36162368,3	MCF-7	breast:
2	chr6:36140328..36143736-chr6:36163832..36166058,3	MCF-7	breast:
3	chr6:36138514..36141454-chr6:36142176..36143879,2	MCF-7	breast:
4	chr6:36143484..36146106-chr6:36172046..36174631,2	K562	blood:

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction
ENSG00000246982	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2239798	0.86[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs2815807	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs2859129	0.93[CEU][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs2859131	0.93[CEU][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs2859133	0.86[AFR][1000 genomes]
rs4236049	0.80[CEU][hapmap]
rs4395718	0.80[CEU][hapmap]
rs4713933	0.87[AFR][1000 genomes]
rs4713940	0.80[CEU][hapmap]
rs4713941	0.82[CEU][hapmap]
rs9394331	0.92[AFR][1000 genomes]
rs9462161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9462162	0.83[ASN][1000 genomes]
rs9462165	0.86[CEU][hapmap]
rs9470222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9470229	0.86[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs9470230	0.86[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs9470233	0.86[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]
rs9470234	0.88[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap]
rs9470235	0.88[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36110000-36145000	Weak transcription	Primary T cells from cord blood	blood
2	chr6:36118600-36145800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:36128400-36145800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:36128600-36149800	Weak transcription	Ovary	ovary
5	chr6:36137200-36145600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:36137600-36145600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:36138000-36145000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:36139600-36144600	Weak transcription	GM12878-XiMat	blood
9	chr6:36140000-36144400	Weak transcription	Primary monocytes fromperipheralblood	blood

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