Variant report

Variant	rs4715472
Chromosome Location	chr6:54603058-54603059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10085187	0.83[EUR][1000 genomes]
rs1039694	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs10807478	0.83[EUR][1000 genomes]
rs12662500	0.82[EUR][1000 genomes]
rs1395634	1.00[CHB][hapmap]
rs1827514	0.83[EUR][1000 genomes]
rs2297805	0.84[CEU][hapmap]
rs4106094	0.82[EUR][1000 genomes]
rs4715473	0.83[EUR][1000 genomes]
rs6459022	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs6916459	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs6934405	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs7773277	0.83[EUR][1000 genomes]
rs9296767	0.80[EUR][1000 genomes]
rs9464125	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs9464130	0.83[EUR][1000 genomes]
rs9464131	0.83[EUR][1000 genomes]
rs9474976	0.91[CEU][hapmap]
rs9474984	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs9474985	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs9474986	0.83[EUR][1000 genomes]
rs9918378	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54600200-54612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54601400-54613800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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