Variant report

Variant	rs9474986
Chromosome Location	chr6:54605728-54605729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10085187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018140	0.85[ASN][1000 genomes]
rs1039694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1039695	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10738113	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10807478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10948832	0.85[ASN][1000 genomes]
rs12210278	0.85[ASN][1000 genomes]
rs12662500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1354308	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1393859	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1395626	0.87[ASN][1000 genomes]
rs1507111	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1572594	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1827514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1983141	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2297805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4094928	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4106094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715471	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4715472	0.83[EUR][1000 genomes]
rs4715473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs542639	0.82[ASN][1000 genomes]
rs58010645	0.90[ASN][1000 genomes]
rs62414317	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6459022	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906010	0.90[ASN][1000 genomes]
rs6907631	0.94[ASN][1000 genomes]
rs6909103	0.87[ASN][1000 genomes]
rs6916459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739195	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7739425	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7747427	0.92[ASN][1000 genomes]
rs7759660	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7770733	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7772650	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7773277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925053	0.89[ASN][1000 genomes]
rs925054	0.90[ASN][1000 genomes]
rs9296765	1.00[ASN][1000 genomes]
rs9296767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9464130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464131	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474954	0.87[ASN][1000 genomes]
rs9474975	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9474976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9474981	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474984	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962307	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs981683	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9918378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54600200-54612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54601400-54613800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links