Variant report

Variant	rs9474975
Chromosome Location	chr6:54593207-54593208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54591002..54596706-chr6:54709941..54714732,14	MCF-7	breast:
2	chr6:54580831..54596896-chr6:54704751..54716103,89	MCF-7	breast:
3	chr6:54586807..54589626-chr6:54590506..54593407,2	MCF-7	breast:
4	chr6:54589905..54593836-chr6:54739903..54743144,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224984	Chromatin interaction
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10085187	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1039694	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10738113	0.85[ASN][1000 genomes]
rs10807478	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12662500	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1507111	0.85[ASN][1000 genomes]
rs1827514	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1983141	0.85[ASN][1000 genomes]
rs2297805	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4094928	0.82[ASN][1000 genomes]
rs4106094	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4715471	0.85[ASN][1000 genomes]
rs4715473	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58010645	0.82[ASN][1000 genomes]
rs62414317	0.85[ASN][1000 genomes]
rs6459022	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6906010	0.82[ASN][1000 genomes]
rs6907631	0.85[ASN][1000 genomes]
rs6916459	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6934405	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7739195	0.85[ASN][1000 genomes]
rs7739425	0.85[ASN][1000 genomes]
rs7747427	0.83[ASN][1000 genomes]
rs7759660	0.85[ASN][1000 genomes]
rs7770733	0.85[ASN][1000 genomes]
rs7772650	0.85[ASN][1000 genomes]
rs7773277	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs925053	0.80[ASN][1000 genomes]
rs925054	0.82[ASN][1000 genomes]
rs9296767	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9464125	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9464130	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9464131	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9474976	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9474981	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9474984	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9474985	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9474986	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs962307	0.85[ASN][1000 genomes]
rs981683	0.85[ASN][1000 genomes]
rs9918378	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv885901	chr6:54588069-54635417	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv885902	chr6:54588069-54656673	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54583600-54594200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:54587200-54594200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:54587400-54594200	Weak transcription	NHEK	skin

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