Variant report

Variant	rs58010645
Chromosome Location	chr6:54554693-54554694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10085187	0.90[ASN][1000 genomes]
rs1018140	0.94[ASN][1000 genomes]
rs1039694	0.90[ASN][1000 genomes]
rs1039695	0.90[ASN][1000 genomes]
rs10738112	0.87[ASN][1000 genomes]
rs10738113	0.97[ASN][1000 genomes]
rs10807478	0.90[ASN][1000 genomes]
rs10948832	0.94[ASN][1000 genomes]
rs12210278	0.94[ASN][1000 genomes]
rs12662500	0.97[ASN][1000 genomes]
rs1280714	0.84[ASN][1000 genomes]
rs1280716	0.84[ASN][1000 genomes]
rs1354308	0.90[ASN][1000 genomes]
rs1393859	0.90[ASN][1000 genomes]
rs1395626	0.97[ASN][1000 genomes]
rs1415875	0.87[ASN][1000 genomes]
rs1507111	0.97[ASN][1000 genomes]
rs1572594	0.90[ASN][1000 genomes]
rs1830662	0.84[ASN][1000 genomes]
rs1983141	0.97[ASN][1000 genomes]
rs2047828	0.84[ASN][1000 genomes]
rs2297805	0.97[ASN][1000 genomes]
rs4094928	0.94[ASN][1000 genomes]
rs4106094	0.97[ASN][1000 genomes]
rs4715465	0.87[ASN][1000 genomes]
rs4715471	0.97[ASN][1000 genomes]
rs4715473	0.90[ASN][1000 genomes]
rs542639	0.91[ASN][1000 genomes]
rs62414317	0.97[ASN][1000 genomes]
rs6459022	0.90[ASN][1000 genomes]
rs6906010	1.00[ASN][1000 genomes]
rs6907631	0.97[ASN][1000 genomes]
rs6909103	0.97[ASN][1000 genomes]
rs6916459	0.90[ASN][1000 genomes]
rs6928097	0.87[ASN][1000 genomes]
rs6934405	0.90[ASN][1000 genomes]
rs7739195	0.97[ASN][1000 genomes]
rs7739425	0.97[ASN][1000 genomes]
rs7747427	0.95[ASN][1000 genomes]
rs7759660	0.97[ASN][1000 genomes]
rs7770733	0.97[ASN][1000 genomes]
rs7771107	0.87[ASN][1000 genomes]
rs7772650	0.97[ASN][1000 genomes]
rs7773277	0.90[ASN][1000 genomes]
rs925053	0.92[ASN][1000 genomes]
rs925054	1.00[ASN][1000 genomes]
rs9296765	0.90[ASN][1000 genomes]
rs9296767	0.90[ASN][1000 genomes]
rs9370324	0.84[ASN][1000 genomes]
rs9395985	1.00[EUR][1000 genomes]
rs9464125	0.97[ASN][1000 genomes]
rs9464130	0.90[ASN][1000 genomes]
rs9464131	0.90[ASN][1000 genomes]
rs9474942	0.83[ASN][1000 genomes]
rs9474954	0.97[ASN][1000 genomes]
rs9474975	0.82[ASN][1000 genomes]
rs9474976	0.97[ASN][1000 genomes]
rs9474981	0.90[ASN][1000 genomes]
rs9474984	0.90[ASN][1000 genomes]
rs9474985	0.90[ASN][1000 genomes]
rs9474986	0.90[ASN][1000 genomes]
rs962307	0.97[ASN][1000 genomes]
rs981683	0.97[ASN][1000 genomes]
rs9918378	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1813136	chr6:54550530-54557193	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1807602	chr6:54553140-54557193	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3473995	chr6:54553738-54557493	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3473997	chr6:54553854-54557380	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv21159	chr6:54553918-54557383	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1804920	chr6:54553922-54557399	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1811098	chr6:54553922-54557399	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1805121	chr6:54553942-54557193	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1805171	chr6:54553942-54557193	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv1809635	chr6:54553942-54557193	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1812631	chr6:54553942-54557193	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1804438	chr6:54554122-54557296	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1805482	chr6:54554122-54557296	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1812353	chr6:54554502-54557193	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54554000-54554800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
2	chr6:54554000-54555200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr6:54554600-54554800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr6:54554600-54555000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr6:54554600-54555400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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