Variant report

Variant	rs2047828
Chromosome Location	chr6:54519350-54519351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1018140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10738112	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10738113	1.00[CEU][hapmap];0.80[CHB][hapmap];0.88[CHD][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10948832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12210278	0.91[ASN][1000 genomes]
rs12662500	0.81[ASN][1000 genomes]
rs1280714	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1280716	1.00[ASN][1000 genomes]
rs1395626	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1415875	0.97[ASN][1000 genomes]
rs1507111	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1830662	1.00[ASN][1000 genomes]
rs1983141	1.00[CEU][hapmap];0.80[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.88[MKK][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297805	0.81[ASN][1000 genomes]
rs4094928	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs4106094	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4715465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715471	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs542639	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58010645	0.84[ASN][1000 genomes]
rs62414317	0.81[ASN][1000 genomes]
rs6459022	0.83[CHD][hapmap]
rs6906010	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6907631	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[CHD][hapmap];0.85[MKK][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6909103	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6916459	0.88[CHD][hapmap]
rs6928097	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6934405	0.83[CHD][hapmap]
rs7739195	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs7739425	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs7747427	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7759470	1.00[CEU][hapmap]
rs7759660	0.81[ASN][1000 genomes]
rs7770733	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7771107	0.97[ASN][1000 genomes]
rs7772650	1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs925053	0.80[AMR][1000 genomes]
rs925054	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs925055	0.82[CEU][hapmap]
rs9296758	0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes]
rs9370324	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395987	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464125	0.81[ASN][1000 genomes]
rs9474942	0.98[ASN][1000 genomes]
rs9474954	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9474976	0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs962307	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs981683	1.00[CEU][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026626	chr6:54506752-54531961	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54519000-54521200	Enhancers	Fetal Intestine Small	intestine

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