Variant report

Variant	rs9395987
Chromosome Location	chr6:54483015-54483016
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1018140	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1039694	0.86[JPT][hapmap]
rs10738112	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10738113	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs10948832	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12662500	0.85[JPT][hapmap]
rs1280714	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1280716	0.87[AMR][1000 genomes]
rs1395626	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1507111	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1983141	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2047828	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2297805	0.86[JPT][hapmap]
rs4094928	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs4106094	1.00[JPT][hapmap]
rs4715465	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4715471	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs542639	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6459022	0.85[JPT][hapmap]
rs6906010	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6907631	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs6909103	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6916459	0.85[JPT][hapmap]
rs6928097	0.81[EUR][1000 genomes]
rs6934405	0.85[JPT][hapmap]
rs7739195	0.85[CEU][hapmap]
rs7739425	0.85[CEU][hapmap]
rs7747427	0.90[EUR][1000 genomes]
rs7759470	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs7772650	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs925054	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs925055	0.82[CEU][hapmap]
rs9296758	0.90[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs9370324	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395986	0.81[ASN][1000 genomes]
rs9464125	0.86[JPT][hapmap]
rs9474954	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9474955	0.81[CHB][hapmap]
rs9474984	0.86[JPT][hapmap]
rs9474985	0.86[JPT][hapmap]
rs962307	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs981683	0.85[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54480000-54489600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:54481800-54483600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:54482000-54483200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:54482000-54483200	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:54482000-54483400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:54482200-54483200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:54482200-54483200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:54482200-54483200	Enhancers	NH-A	brain
9	chr6:54482200-54483200	Enhancers	NHLF	lung
10	chr6:54482200-54483600	Enhancers	Osteobl	bone
11	chr6:54482200-54483800	Enhancers	Fetal Intestine Small	intestine
12	chr6:54482400-54483800	Enhancers	HSMM	muscle

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