Variant report

Variant	rs6909103
Chromosome Location	chr6:54550755-54550756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54547491..54552528-chr6:54710025..54715322,6	MCF-7	breast:
2	chr6:54546361..54548104-chr6:54550298..54552036,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10085187	0.87[ASN][1000 genomes]
rs1018140	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1039694	0.87[ASN][1000 genomes]
rs1039695	0.87[ASN][1000 genomes]
rs10738112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738113	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10807478	0.87[ASN][1000 genomes]
rs10948832	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12210278	0.97[ASN][1000 genomes]
rs12662500	0.94[ASN][1000 genomes]
rs1280714	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1280716	0.87[ASN][1000 genomes]
rs1354308	0.87[ASN][1000 genomes]
rs1393859	0.87[ASN][1000 genomes]
rs1395626	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415875	0.90[ASN][1000 genomes]
rs1507111	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1572594	0.87[ASN][1000 genomes]
rs1830662	0.87[ASN][1000 genomes]
rs1983141	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2047828	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2297805	0.94[ASN][1000 genomes]
rs4094928	0.87[CEU][hapmap];0.91[ASN][1000 genomes]
rs4106094	0.94[ASN][1000 genomes]
rs4715465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4715471	0.87[CEU][hapmap];0.94[ASN][1000 genomes]
rs4715473	0.87[ASN][1000 genomes]
rs542639	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58010645	0.97[ASN][1000 genomes]
rs62414317	0.94[ASN][1000 genomes]
rs6459022	0.87[ASN][1000 genomes]
rs6906010	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6907631	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6916459	0.87[ASN][1000 genomes]
rs6928097	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6933243	0.82[CEU][hapmap]
rs6934405	0.87[ASN][1000 genomes]
rs7739195	0.87[CEU][hapmap];0.94[ASN][1000 genomes]
rs7739425	0.87[CEU][hapmap];0.94[ASN][1000 genomes]
rs7747427	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7759470	1.00[CEU][hapmap]
rs7759660	0.94[ASN][1000 genomes]
rs7770733	0.94[ASN][1000 genomes]
rs7771107	0.90[ASN][1000 genomes]
rs7772650	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7773277	0.87[ASN][1000 genomes]
rs925053	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs925054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs925055	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs9296765	0.87[ASN][1000 genomes]
rs9296767	0.87[ASN][1000 genomes]
rs9370324	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9395987	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9464125	0.94[ASN][1000 genomes]
rs9464130	0.87[ASN][1000 genomes]
rs9464131	0.87[ASN][1000 genomes]
rs9474942	0.86[ASN][1000 genomes]
rs9474954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474976	0.94[ASN][1000 genomes]
rs9474981	0.87[ASN][1000 genomes]
rs9474984	0.87[ASN][1000 genomes]
rs9474985	0.87[ASN][1000 genomes]
rs9474986	0.87[ASN][1000 genomes]
rs962307	0.85[CEU][hapmap];0.94[ASN][1000 genomes]
rs981683	0.87[CEU][hapmap];0.94[ASN][1000 genomes]
rs9918378	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1813136	chr6:54550530-54557193	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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