Variant report

Variant	rs1830662
Chromosome Location	chr6:54488143-54488144
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1018140	0.91[ASN][1000 genomes]
rs10738112	0.97[ASN][1000 genomes]
rs10738113	0.83[CHD][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs10948832	0.91[ASN][1000 genomes]
rs12210278	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12662500	0.81[ASN][1000 genomes]
rs1280714	1.00[ASN][1000 genomes]
rs1280716	1.00[ASN][1000 genomes]
rs1395626	0.87[ASN][1000 genomes]
rs1415875	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1507111	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1983141	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2047828	1.00[ASN][1000 genomes]
rs2297805	0.81[ASN][1000 genomes]
rs4106094	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4715465	0.97[ASN][1000 genomes]
rs4715471	0.81[ASN][1000 genomes]
rs542639	0.91[ASN][1000 genomes]
rs58010645	0.84[ASN][1000 genomes]
rs62414317	0.81[ASN][1000 genomes]
rs6906010	0.84[ASN][1000 genomes]
rs6907631	0.81[ASN][1000 genomes]
rs6909103	0.87[ASN][1000 genomes]
rs6916459	0.83[CHD][hapmap]
rs6928097	0.97[ASN][1000 genomes]
rs7739195	0.81[ASN][1000 genomes]
rs7739425	0.81[ASN][1000 genomes]
rs7759660	0.81[ASN][1000 genomes]
rs7770733	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7771107	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772650	1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs925054	0.84[ASN][1000 genomes]
rs9296758	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9370324	1.00[ASN][1000 genomes]
rs9464125	0.81[ASN][1000 genomes]
rs9474942	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9474954	0.87[ASN][1000 genomes]
rs9474976	0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs962307	0.81[ASN][1000 genomes]
rs981683	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv981146	chr6:54487057-54496676	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54480000-54489600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links