Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54483454..54486448-chr6:54709404..54710933,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10738113	0.88[CHD][hapmap];1.00[MEX][hapmap]
rs12210278	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1280714	0.82[ASN][1000 genomes]
rs1280716	0.82[ASN][1000 genomes]
rs1415875	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1507111	1.00[JPT][hapmap]
rs1830662	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1983141	0.87[CHD][hapmap];0.82[JPT][hapmap]
rs2047828	0.82[ASN][1000 genomes]
rs4106094	1.00[JPT][hapmap]
rs6459022	0.83[CHD][hapmap]
rs6907631	0.83[CHD][hapmap]
rs6916459	0.88[CHD][hapmap]
rs6934405	0.83[CHD][hapmap]
rs7770733	0.88[JPT][hapmap]
rs7771107	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7772650	1.00[MEX][hapmap]
rs9370324	0.82[ASN][1000 genomes]
rs9395987	0.88[ASN][1000 genomes]
rs9474942	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9474976	0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54480000-54489600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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