Variant report

Variant	rs1280716
Chromosome Location	chr6:54498389-54498390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1018140	0.91[ASN][1000 genomes]
rs10738112	0.97[ASN][1000 genomes]
rs10738113	0.85[CEU][hapmap];0.80[CHB][hapmap];0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs10948832	0.91[ASN][1000 genomes]
rs12210278	0.91[ASN][1000 genomes]
rs12662500	0.81[ASN][1000 genomes]
rs1280714	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1395626	0.87[ASN][1000 genomes]
rs1415875	0.97[ASN][1000 genomes]
rs1507111	0.87[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1830662	1.00[ASN][1000 genomes]
rs1983141	0.80[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2047828	1.00[ASN][1000 genomes]
rs2297805	0.81[ASN][1000 genomes]
rs4094928	0.80[CHB][hapmap]
rs4106094	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4715465	0.97[ASN][1000 genomes]
rs4715471	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs542639	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58010645	0.84[ASN][1000 genomes]
rs62414317	0.81[ASN][1000 genomes]
rs6906010	0.84[ASN][1000 genomes]
rs6907631	0.87[CEU][hapmap];0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs6909103	0.87[CEU][hapmap];0.87[ASN][1000 genomes]
rs6916459	0.82[CHD][hapmap]
rs6928097	0.97[ASN][1000 genomes]
rs7739195	0.81[ASN][1000 genomes]
rs7739425	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs7759470	0.87[CEU][hapmap]
rs7759660	0.81[ASN][1000 genomes]
rs7770733	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7771107	0.97[ASN][1000 genomes]
rs7772650	0.82[CEU][hapmap];0.81[ASN][1000 genomes]
rs925054	0.84[ASN][1000 genomes]
rs9296758	0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9370324	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395987	0.87[AMR][1000 genomes]
rs9464125	0.81[ASN][1000 genomes]
rs9474942	0.98[ASN][1000 genomes]
rs9474954	0.87[ASN][1000 genomes]
rs9474976	0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs962307	0.81[ASN][1000 genomes]
rs981683	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54497800-54498400	Enhancers	Fetal Intestine Small	intestine
2	chr6:54498000-54498600	Enhancers	Fetal Heart	heart
3	chr6:54498000-54498800	Flanking Active TSS	Liver	Liver
4	chr6:54498200-54498600	Active TSS	Duodenum Mucosa	Duodenum
5	chr6:54498200-54498600	Enhancers	Skeletal Muscle Female	skeletal muscle

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