Variant report

Variant	rs10948832
Chromosome Location	chr6:54510654-54510655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10085187	0.85[ASN][1000 genomes]
rs1018140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1039694	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1039695	0.85[ASN][1000 genomes]
rs10738112	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10738113	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10807478	0.85[ASN][1000 genomes]
rs12210278	1.00[ASN][1000 genomes]
rs12662500	0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1280714	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1280716	0.91[ASN][1000 genomes]
rs1354308	0.85[ASN][1000 genomes]
rs1393859	0.85[ASN][1000 genomes]
rs1395626	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415875	0.87[ASN][1000 genomes]
rs1507111	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1572594	0.85[ASN][1000 genomes]
rs1830662	0.91[ASN][1000 genomes]
rs1983141	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2047828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2297805	0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs4094928	0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs4106094	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4712067	0.82[CHB][hapmap]
rs4715465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4715471	0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs4715473	0.85[ASN][1000 genomes]
rs542639	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58010645	0.94[ASN][1000 genomes]
rs62414317	0.91[ASN][1000 genomes]
rs6459022	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6906010	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6907631	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6909103	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6916459	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6928097	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933243	0.82[CEU][hapmap]
rs6934405	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7739195	0.87[CEU][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs7739425	0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[ASN][1000 genomes]
rs7747427	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7759470	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7759660	0.91[ASN][1000 genomes]
rs7770733	0.86[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs7771107	0.87[ASN][1000 genomes]
rs7772650	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7773277	0.85[ASN][1000 genomes]
rs925053	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs925054	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs925055	0.85[CEU][hapmap]
rs9296758	0.89[JPT][hapmap]
rs9296765	0.85[ASN][1000 genomes]
rs9296767	0.85[ASN][1000 genomes]
rs9370324	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9395987	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464125	0.83[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9464130	0.85[ASN][1000 genomes]
rs9464131	0.85[ASN][1000 genomes]
rs9474942	0.89[ASN][1000 genomes]
rs9474954	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9474976	0.81[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs9474981	0.85[ASN][1000 genomes]
rs9474984	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9474985	0.83[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9474986	0.85[ASN][1000 genomes]
rs962307	0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs981683	0.87[CEU][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs9918378	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026626	chr6:54506752-54531961	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54507000-54511800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:54509600-54510800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:54509600-54512400	Enhancers	Colon Smooth Muscle	Colon
4	chr6:54510200-54511000	Enhancers	Osteobl	bone
5	chr6:54510400-54511400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:54510400-54511600	Weak transcription	Aorta	Aorta
7	chr6:54510400-54512200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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