Variant report

Variant	rs6928097
Chromosome Location	chr6:54534072-54534073
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1018140	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10738112	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10738113	0.84[ASN][1000 genomes]
rs10948832	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12210278	0.87[ASN][1000 genomes]
rs12662500	0.84[ASN][1000 genomes]
rs1280714	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1280716	0.97[ASN][1000 genomes]
rs1395626	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1415875	1.00[ASN][1000 genomes]
rs1507111	0.84[ASN][1000 genomes]
rs1830662	0.97[ASN][1000 genomes]
rs1983141	0.84[ASN][1000 genomes]
rs2047828	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2297805	0.84[ASN][1000 genomes]
rs4094928	0.81[ASN][1000 genomes]
rs4106094	0.84[ASN][1000 genomes]
rs4715465	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715471	0.84[ASN][1000 genomes]
rs542639	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58010645	0.87[ASN][1000 genomes]
rs62414317	0.84[ASN][1000 genomes]
rs6906010	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6907631	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6909103	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7739195	0.84[ASN][1000 genomes]
rs7739425	0.84[ASN][1000 genomes]
rs7747427	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7759660	0.84[ASN][1000 genomes]
rs7770733	0.84[ASN][1000 genomes]
rs7771107	1.00[ASN][1000 genomes]
rs7772650	0.84[ASN][1000 genomes]
rs925054	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9370324	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9395987	0.81[EUR][1000 genomes]
rs9464125	0.84[ASN][1000 genomes]
rs9474942	0.95[ASN][1000 genomes]
rs9474954	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9474976	0.84[ASN][1000 genomes]
rs962307	0.84[ASN][1000 genomes]
rs981683	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54530600-54534200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:54532800-54534600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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