Variant report

Variant	rs471693
Chromosome Location	chr6:11620846-11620847
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs480237	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs483847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs539317	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs544259	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs563284	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs564911	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565222	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs576849	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380399	0.91[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:11611200-11622600	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:11615600-11621400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:11616600-11622200	Weak transcription	Psoas Muscle	Psoas
5	chr6:11616800-11621200	Weak transcription	Fetal Stomach	stomach
6	chr6:11616800-11622200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:11616800-11622400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:11616800-11622600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:11616800-11622800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11616800-11623000	Weak transcription	Lung	lung
11	chr6:11618200-11621800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:11618600-11622600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:11618800-11625200	Weak transcription	HSMM	muscle
14	chr6:11618800-11627200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:11619200-11621200	Weak transcription	NHLF	lung
16	chr6:11619600-11621000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr6:11619600-11622000	Strong transcription	HSMMtube	muscle
18	chr6:11620200-11622400	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:11620800-11623200	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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