Variant report

Variant	rs544259
Chromosome Location	chr6:11623403-11623404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs471693	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs480237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs483847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs527536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs539317	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs563284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564911	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs565222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs576849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9380399	0.93[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:11618800-11625200	Weak transcription	HSMM	muscle
3	chr6:11618800-11627200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:11621200-11623800	Enhancers	Fetal Stomach	stomach
5	chr6:11622000-11625200	Weak transcription	HSMMtube	muscle
6	chr6:11622200-11623600	Enhancers	Stomach Smooth Muscle	stomach
7	chr6:11622400-11623600	Enhancers	Colon Smooth Muscle	Colon
8	chr6:11622600-11623600	Enhancers	Fetal Muscle Leg	muscle
9	chr6:11622800-11623600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11622800-11623600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:11623000-11623600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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