Variant report

Variant	rs4719077
Chromosome Location	chr7:70604306-70604307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2057942	0.85[ASN][1000 genomes]
rs4717581	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5008002	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62458181	0.92[EUR][1000 genomes]
rs62459587	1.00[EUR][1000 genomes]
rs62459615	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62459616	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62459617	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62459618	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62459619	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62459620	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62459621	0.92[EUR][1000 genomes]
rs7783769	0.86[ASN][1000 genomes]
rs7807036	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70598600-70611200	Weak transcription	Right Atrium	heart
2	chr7:70598800-70605000	Weak transcription	Aorta	Aorta
3	chr7:70598800-70611200	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:70599000-70611000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:70599400-70605000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:70599400-70605400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:70599600-70605000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:70599600-70605200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:70599600-70609400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:70599600-70611400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:70599800-70605000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:70601000-70605000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:70601000-70613600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:70601200-70605000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:70601200-70605200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:70601200-70605200	Weak transcription	Right Ventricle	heart
17	chr7:70601200-70610200	Weak transcription	Ovary	ovary
18	chr7:70601400-70604800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:70601400-70604800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr7:70601400-70605000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:70601400-70605200	Weak transcription	Pancreas	Pancrea
22	chr7:70601400-70605600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:70601600-70605200	Weak transcription	Left Ventricle	heart
24	chr7:70602200-70605200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:70603200-70604400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:70603200-70607200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:70604000-70606000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:70604200-70605000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr7:70604200-70606200	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links