Variant report

Variant	rs7783769
Chromosome Location	chr7:70595648-70595649
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10234969	0.90[EUR][1000 genomes]
rs10275799	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs10950241	0.82[EUR][1000 genomes]
rs11761326	0.88[EUR][1000 genomes]
rs12669913	0.90[EUR][1000 genomes]
rs2057941	0.90[EUR][1000 genomes]
rs2057942	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2867037	0.90[EUR][1000 genomes]
rs2867038	0.90[EUR][1000 genomes]
rs2867039	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs2903457	0.88[EUR][1000 genomes]
rs2903458	0.90[EUR][1000 genomes]
rs2903459	0.89[EUR][1000 genomes]
rs4324824	0.90[EUR][1000 genomes]
rs4527772	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs4717581	0.92[ASN][1000 genomes]
rs4719077	0.86[ASN][1000 genomes]
rs5008001	0.90[EUR][1000 genomes]
rs62459617	0.93[ASN][1000 genomes]
rs6460640	0.88[EUR][1000 genomes]
rs6950440	0.88[EUR][1000 genomes]
rs6951608	0.91[EUR][1000 genomes]
rs6955782	0.88[EUR][1000 genomes]
rs6962253	0.88[EUR][1000 genomes]
rs7807036	0.86[ASN][1000 genomes]
rs7810849	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3406129	chr7:70595641-70598589	Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70594600-70596000	Bivalent Enhancer	Fetal Muscle Leg	muscle
2	chr7:70594800-70595800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:70594800-70596000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70595000-70595800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:70595000-70595800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:70595000-70595800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:70595000-70596000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:70595000-70596000	Enhancers	Fetal Lung	lung
9	chr7:70595200-70595800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:70595200-70595800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:70595200-70596000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:70595400-70595800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
13	chr7:70595400-70595800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:70595400-70595800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:70595400-70595800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:70595400-70595800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr7:70595400-70595800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:70595400-70596000	Active TSS	Fetal Brain Male	brain
19	chr7:70595400-70596000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr7:70595600-70595800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr7:70595600-70595800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:70595600-70595800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr7:70595600-70595800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr7:70595600-70595800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
25	chr7:70595600-70596000	Enhancers	Fetal Brain Female	brain
26	chr7:70595600-70596000	Bivalent Enhancer	Fetal Stomach	stomach
27	chr7:70595600-70596000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr7:70595600-70596000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr7:70595600-70596000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr7:70595600-70596000	Bivalent Enhancer	NH-A	brain
31	chr7:70595600-70596400	Active TSS	Colonic Mucosa	Colon
32	chr7:70595600-70596400	Enhancers	Fetal Heart	heart

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