Variant report

Variant	rs62459617
Chromosome Location	chr7:70595559-70595560
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2057942	0.92[ASN][1000 genomes]
rs4717581	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4719077	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5008002	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62458181	0.92[EUR][1000 genomes]
rs62459587	1.00[EUR][1000 genomes]
rs62459615	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62459616	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62459618	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62459619	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62459620	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62459621	0.92[EUR][1000 genomes]
rs7783769	0.93[ASN][1000 genomes]
rs7807036	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70594600-70596000	Bivalent Enhancer	Fetal Muscle Leg	muscle
2	chr7:70594800-70595800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:70594800-70596000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70595000-70595600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr7:70595000-70595800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:70595000-70595800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:70595000-70595800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:70595000-70596000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:70595000-70596000	Enhancers	Fetal Lung	lung
10	chr7:70595200-70595800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:70595200-70595800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:70595200-70596000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:70595400-70595600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
14	chr7:70595400-70595600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
15	chr7:70595400-70595600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:70595400-70595600	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:70595400-70595600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
18	chr7:70595400-70595800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
19	chr7:70595400-70595800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:70595400-70595800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:70595400-70595800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:70595400-70595800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr7:70595400-70595800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:70595400-70596000	Active TSS	Fetal Brain Male	brain
25	chr7:70595400-70596000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links