Variant report
| Variant | rs4722704 |
|---|---|
| Chromosome Location | chr7:27480123-27480124 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11563953 | 0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12700804 | 0.89[EUR][1000 genomes] |
| rs12700806 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1541359 | 0.91[EUR][1000 genomes] |
| rs1554637 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17429761 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34600677 | 1.00[ASN][1000 genomes] |
| rs34924985 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34989520 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35240477 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35468459 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35713538 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3915087 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3915088 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6958811 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6970308 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6979081 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs71539516 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7784592 | 1.00[CEU][hapmap];0.92[YRI][hapmap];0.93[EUR][1000 genomes] |
| rs969410 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830930 | chr7:27395838-27587355 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:27475800-27481600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
