Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10241677	1.00[JPT][hapmap]
rs10276966	1.00[JPT][hapmap]
rs11563953	0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769034	1.00[ASN][1000 genomes]
rs12700804	0.87[EUR][1000 genomes]
rs12700806	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1541359	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554637	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429761	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924985	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34989520	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35240477	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35468459	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35713538	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3915087	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3915088	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722704	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6957243	1.00[JPT][hapmap]
rs6958873	0.83[ASN][1000 genomes]
rs6970308	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979081	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71539516	0.95[EUR][1000 genomes]
rs7784592	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs969410	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27494000-27496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:27494200-27496800	Weak transcription	NH-A	brain
3	chr7:27494200-27497000	Weak transcription	Osteobl	bone
4	chr7:27494200-27498400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:27494200-27498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:27494200-27498400	Weak transcription	Adipose Nuclei	Adipose
7	chr7:27494200-27498400	Weak transcription	NHLF	lung
8	chr7:27494200-27498600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:27494400-27498600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:27494400-27498600	Weak transcription	NHDF-Ad	bronchial
11	chr7:27494600-27497000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: