Variant report

Variant	rs3915088
Chromosome Location	chr7:27482526-27482527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27476223..27478695-chr7:27480805..27482916,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10241677	1.00[JPT][hapmap]
rs10276966	1.00[JPT][hapmap]
rs11563953	0.93[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769034	1.00[ASN][1000 genomes]
rs12700804	0.89[EUR][1000 genomes]
rs12700806	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1541359	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429761	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34989520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35240477	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35468459	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35713538	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3915087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4722704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6957243	1.00[JPT][hapmap]
rs6958811	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958873	0.83[ASN][1000 genomes]
rs6970308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979081	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71539516	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7784592	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[EUR][1000 genomes]
rs969410	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27481600-27482600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:27481600-27482800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:27481800-27482600	Enhancers	Osteobl	bone
4	chr7:27481800-27482800	Enhancers	HMEC	breast
5	chr7:27481800-27482800	Enhancers	NHEK	skin
6	chr7:27482000-27482800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:27482200-27482600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:27482200-27482600	Enhancers	A549	lung
9	chr7:27482200-27482600	Enhancers	NHLF	lung
10	chr7:27482200-27482800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:27482200-27482800	Enhancers	NHDF-Ad	bronchial

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