Variant report

Variant	rs6958873
Chromosome Location	chr7:27427936-27427937
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10241677	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10276966	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11563953	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11769034	0.83[ASN][1000 genomes]
rs1541359	0.83[ASN][1000 genomes]
rs1554637	0.83[ASN][1000 genomes]
rs17429761	0.83[ASN][1000 genomes]
rs35468459	0.83[ASN][1000 genomes]
rs35713538	0.83[ASN][1000 genomes]
rs3915088	0.83[ASN][1000 genomes]
rs6957243	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6958811	0.83[ASN][1000 genomes]
rs6970308	0.83[ASN][1000 genomes]
rs6978648	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6979081	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6958873	RPS2P32	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27427200-27429000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:27427800-27428200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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