Variant report

Variant	rs4727770
Chromosome Location	chr7:112084797-112084798
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11771128	0.82[ASW][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12216563	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13223482	0.89[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3109105	0.82[ASN][1000 genomes]
rs3109107	0.82[ASN][1000 genomes]
rs3128392	0.82[ASN][1000 genomes]
rs4730544	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58295122	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6944057	0.93[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6969907	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs720639	0.82[ASW][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7780160	0.91[ASW][hapmap];0.97[GIH][hapmap];0.89[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7798715	0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7810707	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1801262	chr7:112071795-112104179	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
3	chr7:112075800-112089800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:112082400-112084800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr7:112083600-112089600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:112083800-112087600	Weak transcription	Pancreas	Pancrea
7	chr7:112083800-112090000	Weak transcription	Gastric	stomach
8	chr7:112084600-112089400	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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