Variant report

Variant	rs720639
Chromosome Location	chr7:112067629-112067630
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11761827	0.89[EUR][1000 genomes]
rs11771128	1.00[ASW][hapmap];0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12216563	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13223482	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34020242	0.82[EUR][1000 genomes]
rs35734252	0.85[EUR][1000 genomes]
rs4727770	0.82[ASW][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4730544	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58295122	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62474016	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6944057	1.00[CEU][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6969907	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6976652	0.85[EUR][1000 genomes]
rs7780160	0.92[ASW][hapmap];0.93[CEU][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.84[LWK][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7798715	0.93[CEU][hapmap];0.92[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7810707	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9649350	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112063600-112070000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
4	chr7:112064400-112068200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:112064400-112068600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:112064400-112074800	Weak transcription	A549	lung
7	chr7:112065800-112079800	Weak transcription	Pancreas	Pancrea
8	chr7:112066600-112068200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:112067000-112069600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:112067400-112068600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:112067600-112068800	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links