Variant report

Variant	rs6944057
Chromosome Location	chr7:112074766-112074767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11761827	0.87[EUR][1000 genomes]
rs11771128	0.93[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216563	0.86[EUR][1000 genomes]
rs13223482	1.00[CEU][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs3109105	0.83[ASN][1000 genomes]
rs3109107	0.83[CHD][hapmap];0.83[ASN][1000 genomes]
rs3128392	0.83[ASN][1000 genomes]
rs34020242	0.81[EUR][1000 genomes]
rs4727770	0.93[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4730544	0.86[EUR][1000 genomes]
rs58295122	0.84[EUR][1000 genomes]
rs6969907	0.84[EUR][1000 genomes]
rs720639	1.00[CEU][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7780160	0.93[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs7798715	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs7810707	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1801262	chr7:112071795-112104179	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
3	chr7:112064400-112074800	Weak transcription	A549	lung
4	chr7:112065800-112079800	Weak transcription	Pancreas	Pancrea
5	chr7:112068600-112077200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:112071000-112077000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:112072400-112074800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:112073600-112074800	Weak transcription	NHEK	skin
9	chr7:112073600-112075000	Weak transcription	HMEC	breast
10	chr7:112073600-112075200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:112073800-112074800	Weak transcription	HSMMtube	muscle
12	chr7:112073800-112075000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:112073800-112075000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:112073800-112075200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:112073800-112075400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:112073800-112082400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr7:112074000-112077200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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