Variant report

Variant	rs4729566
Chromosome Location	chr7:99614313-99614314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:80)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:80 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr7:99613408-99614422	K562	blood:	n/a	n/a
2	GATA3	chr7:99613942-99614731	SH-SY5Y	brain:	n/a	chr7:99614285-99614295
3	FOS	chr7:99614123-99614322	MCF10A-Er-Src	breast:	n/a	n/a
4	CTCF	chr7:99614180-99614330	AG09319	gingival:	n/a	n/a
5	CTCF	chr7:99614240-99614390	HPAF	blood vessel:	n/a	n/a
6	POLR2A	chr7:99613551-99614567	HepG2	liver:	n/a	n/a
7	CTCF	chr7:99614149-99614375	HepG2	liver:	n/a	n/a
8	CTCF	chr7:99614240-99614390	HCPEpiC	choroid plexus:	n/a	n/a
9	POLR2A	chr7:99612932-99614539	GM12892	blood:	n/a	n/a
10	CTCF	chr7:99614200-99614350	BE2_C	brain:	n/a	n/a
11	GABPA	chr7:99612680-99614345	SK-N-SH	brain:	n/a	n/a
12	TBP	chr7:99613669-99614546	HepG2	liver:	n/a	n/a
13	JUND	chr7:99613026-99614387	HepG2	liver:	n/a	chr7:99613217-99613228
14	POLR2A	chr7:99612859-99614615	GM12878	blood:	n/a	n/a
15	CTCF	chr7:99614180-99614330	RPTEC	kidney:	n/a	n/a
16	PML	chr7:99612952-99614319	K562	blood:	n/a	n/a
17	IRF1	chr7:99614073-99614384	K562	blood:	n/a	n/a
18	CTCF	chr7:99614240-99614390	HMF	breast:	n/a	n/a
19	MYBL2	chr7:99613887-99614631	HepG2	liver:	n/a	n/a
20	POLR2A	chr7:99612814-99614441	SK-N-SH	brain:	n/a	n/a
21	MAZ	chr7:99614293-99614473	GM12878	blood:	n/a	n/a
22	SMC3	chr7:99614182-99614557	HepG2	liver:	n/a	n/a
23	POLR2A	chr7:99612755-99614580	GM12878	blood:	n/a	n/a
24	CTCF	chr7:99614260-99614410	HPF	lung:	n/a	n/a
25	POLR2A	chr7:99612993-99614826	IMR90	lung:	n/a	n/a
26	POLR2A	chr7:99612958-99614499	K562	blood:	n/a	n/a
27	JUND	chr7:99612471-99614626	SK-N-SH	brain:	n/a	chr7:99612840-99612849 chr7:99613217-99613228
28	CTCF	chr7:99614260-99614410	AG04449	skin:	n/a	n/a
29	POLR2A	chr7:99612769-99614425	Hela-S3	cervix:	n/a	n/a
30	HEY1	chr7:99612980-99614581	HepG2	liver:	n/a	chr7:99613374-99613389 chr7:99613415-99613430
31	RAD21	chr7:99614117-99614519	HepG2	liver:	n/a	n/a
32	POLR2A	chr7:99612945-99614322	HUVEC	blood vessel:	n/a	n/a
33	MYBL2	chr7:99613767-99614568	HepG2	liver:	n/a	n/a
34	POLR2A	chr7:99613039-99614436	HUVEC	blood vessel:	n/a	n/a
35	CTCF	chr7:99614240-99614390	HBMEC	blood vessel:	n/a	n/a
36	CTCF	chr7:99614269-99614333	HepG2	liver:	n/a	n/a
37	POLR2A	chr7:99613961-99614427	HepG2	liver:	n/a	n/a
38	POLR2A	chr7:99612902-99614356	HUVEC	blood vessel:	n/a	n/a
39	POLR2A	chr7:99612889-99614678	MCF10A-Er-Src	breast:	n/a	n/a
40	HEY1	chr7:99612891-99614640	HepG2	liver:	n/a	chr7:99613374-99613389 chr7:99613415-99613430
41	CHD1	chr7:99612561-99615328	IMR90	lung:	n/a	n/a
42	CTCF	chr7:99614240-99614390	Caco-2	colon:	n/a	n/a
43	CTCF	chr7:99614100-99614370	BJ	skin:	n/a	n/a
44	CEBPB	chr7:99614035-99614349	HepG2	liver:	n/a	n/a
45	TAF1	chr7:99612921-99614346	H1-neurons	neurons:	n/a	n/a
46	CTCF	chr7:99614240-99614390	HRE	kidney:	n/a	n/a
47	CTCF	chr7:99614240-99614390	HUVEC	blood vessel:	n/a	n/a
48	POLR2A	chr7:99612885-99614679	MCF10A-Er-Src	breast:	n/a	n/a
49	CREB1	chr7:99612872-99614370	HepG2	liver:	n/a	chr7:99613637-99613650
50	POLR2A	chr7:99613014-99614565	HepG2	liver:	n/a	n/a

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99611884..99615327-chr7:99716112..99720187,5	K562	blood:
2	chr7:99612024..99615373-chr7:99646672..99650813,5	MCF-7	breast:
3	chr7:99614250..99615860-chr7:99701481..99703800,2	K562	blood:
4	chr7:99611801..99614602-chr7:99679230..99681000,2	MCF-7	breast:
5	chr7:99612131..99615242-chr7:99723277..99726662,3	K562	blood:
6	chr7:99516539..99518815-chr7:99613011..99615072,3	K562	blood:
7	chr7:99588651..99591308-chr7:99612703..99615208,2	K562	blood:
8	chr7:99612316..99614498-chr7:99678113..99681049,2	MCF-7	breast:
9	chr7:99612325..99614517-chr7:99685585..99687271,2	MCF-7	breast:
10	chr7:99613754..99615518-chr7:99715679..99717343,2	K562	blood:
11	chr7:99613224..99616757-chr7:99646903..99650456,6	K562	blood:
12	chr7:99611430..99615857-chr7:99675156..99681193,15	K562	blood:
13	chr7:99612390..99616211-chr7:99697108..99699457,4	K562	blood:
14	chr7:99589288..99591810-chr7:99612834..99614804,4	MCF-7	breast:
15	chr7:99214190..99217311-chr7:99612118..99614634,3	K562	blood:
16	chr7:99612390..99617445-chr7:99697108..99699685,5	K562	blood:
17	chr7:99515716..99518824-chr7:99610446..99615072,4	K562	blood:
18	chr7:99612275..99615910-chr7:99677885..99681193,8	K562	blood:

No data

Variant related genes	Relation type
ZKSCAN1	TF binding region
ENSG00000221838	Chromatin interaction
ENSG00000168090	Chromatin interaction
ENSG00000146833	Chromatin interaction
ENSG00000214309	Chromatin interaction
ENSG00000235713	Chromatin interaction
ENSG00000166508	Chromatin interaction
ENSG00000166997	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000106290	Chromatin interaction
ENSG00000166526	Chromatin interaction
ENSG00000166529	Chromatin interaction
ENSG00000242798	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1015538	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10281368	0.85[MEX][hapmap];0.82[ASN][1000 genomes]
rs1060544	0.83[ASN][1000 genomes]
rs11771331	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12705070	0.90[MEX][hapmap];0.93[YRI][hapmap];0.80[ASN][1000 genomes]
rs13223792	0.85[MEX][hapmap]
rs1880949	0.85[MEX][hapmap]
rs1963304	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35146811	0.85[MEX][hapmap]
rs4134903	0.85[MEX][hapmap]
rs4424195	0.90[MEX][hapmap];0.93[YRI][hapmap];0.82[ASN][1000 genomes]
rs4729567	0.93[YRI][hapmap]
rs59261051	0.82[ASN][1000 genomes]
rs6465761	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6465762	0.84[ASN][1000 genomes]
rs6953441	0.84[ASN][1000 genomes]
rs6974305	0.83[ASN][1000 genomes]
rs7788746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807641	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases
4	esv1828362	chr7:99530233-99628773	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv1830255	chr7:99544908-99626331	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	esv1832985	chr7:99546856-99615911	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
7	esv1825207	chr7:99552275-99625510	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	esv1829545	chr7:99553071-99626386	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
9	esv1825655	chr7:99554378-99626186	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	esv1828702	chr7:99554757-99624145	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	esv1831603	chr7:99554769-99624157	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
12	esv1830357	chr7:99562984-99617852	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
13	esv1826636	chr7:99563961-99618606	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	nsv433391	chr7:99563961-99618606	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
15	esv1831741	chr7:99563961-99626295	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
16	esv1826723	chr7:99564091-99616038	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
17	esv1826228	chr7:99564091-99625688	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
18	esv1830115	chr7:99564091-99625688	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
19	esv19900	chr7:99564133-99625411	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
20	esv1827919	chr7:99564276-99615911	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
21	esv1833207	chr7:99564276-99628466	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
22	esv1827474	chr7:99564291-99626186	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
23	esv32694	chr7:99565608-99629919	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
24	esv1831013	chr7:99566252-99621841	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
25	esv1828033	chr7:99566252-99634770	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
26	esv1830934	chr7:99566264-99624157	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
27	esv1828426	chr7:99566264-99626343	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
28	esv1827496	chr7:99566264-99634782	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
29	esv1827607	chr7:99567455-99614313	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
30	esv1830505	chr7:99567455-99614313	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
31	esv1831989	chr7:99567455-99614313	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
32	esv1833477	chr7:99567455-99614313	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
33	esv1826730	chr7:99567455-99626295	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
34	esv1833435	chr7:99567455-99626295	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
35	esv1829558	chr7:99569394-99626331	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
36	nsv469687	chr7:99572543-99755141	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1115 gene(s)	inside rSNPs	diseases
37	nsv482601	chr7:99572543-99755141	Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1115 gene(s)	inside rSNPs	diseases
38	esv1828823	chr7:99583219-99618606	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
39	esv1829649	chr7:99583219-99618606	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
40	esv1826763	chr7:99583219-99626295	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs4729566	C7orf61	cis	parietal	SCAN
rs4729566	ZNHIT1	cis	parietal	SCAN
rs4729566	LMTK2	cis	cerebellum	SCAN
rs4729566	ZNF394	cis	cerebellum	SCAN
rs4729566	BUD31	cis	parietal	SCAN
rs4729566	GATS	cis	parietal	SCAN
rs4729566	AP4M1	cis	Artery Tibial	GTEx
rs4729566	EMD	trans	cerebellum	SCAN
rs4729566	AP4M1	cis	lymphoblastoid	seeQTL
rs4729566	GATS	cis	cerebellum	SCAN
rs4729566	ZSCAN21	cis	parietal	SCAN
rs4729566	TAF6	cis	Thyroid	GTEx
rs4729566	ZKSCAN1	cis	cerebellum	SCAN
rs4729566	PILRB	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99612600-99614600	Active TSS	Sigmoid Colon	Sigmoid Colon
2	chr7:99612800-99614400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:99612800-99614400	Active TSS	Fetal Kidney	kidney
4	chr7:99612800-99614600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:99612800-99614600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:99612800-99614600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:99612800-99614600	Active TSS	Psoas Muscle	Psoas
8	chr7:99612800-99614600	Active TSS	Right Ventricle	heart
9	chr7:99612800-99614800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr7:99612800-99615200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:99613000-99614400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:99613000-99614400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:99613000-99614400	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr7:99613000-99614400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:99613000-99614400	Active TSS	Brain Hippocampus Middle	brain
16	chr7:99613000-99614400	Active TSS	Esophagus	oesophagus
17	chr7:99613000-99614400	Active TSS	Ovary	ovary
18	chr7:99613000-99614400	Active TSS	Small Intestine	intestine
19	chr7:99613000-99614600	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr7:99613000-99614600	Active TSS	A549	lung
21	chr7:99613000-99614600	Active TSS	NHDF-Ad	bronchial
22	chr7:99613000-99614800	Active TSS	H1 Cell Line	embryonic stem cell
23	chr7:99613000-99615000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:99613000-99615000	Active TSS	Brain Cingulate Gyrus	brain
25	chr7:99613000-99615000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr7:99613000-99615000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:99613000-99615200	Active TSS	HSMMtube	muscle
28	chr7:99613000-99616600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr7:99613200-99614400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:99613200-99614400	Active TSS	Liver	Liver
31	chr7:99613200-99614400	Active TSS	Fetal Muscle Trunk	muscle
32	chr7:99613200-99614400	Active TSS	Lung	lung
33	chr7:99613200-99614400	Active TSS	Pancreas	Pancrea
34	chr7:99613200-99614800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:99613200-99615000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:99613200-99615000	Active TSS	Fetal Intestine Large	intestine
37	chr7:99613400-99614400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
38	chr7:99613400-99614600	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr7:99613400-99614600	Active TSS	Right Atrium	heart
40	chr7:99613600-99614400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr7:99613600-99614600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr7:99613600-99614600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr7:99613600-99614600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:99613600-99614600	Bivalent/Poised TSS	HepG2	liver
45	chr7:99613800-99614400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:99613800-99614400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr7:99613800-99614400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr7:99613800-99614400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr7:99613800-99614400	Active TSS	Brain Germinal Matrix	brain
50	chr7:99613800-99614400	Flanking Active TSS	Thymus	Thymus

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