Variant report

Variant	rs4729993
Chromosome Location	chr7:103984220-103984221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1024404	0.83[CEU][hapmap]
rs1024406	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10274138	0.81[GIH][hapmap]
rs12705207	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[YRI][hapmap]
rs13234807	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap]
rs2106503	0.81[GIH][hapmap]
rs2891724	0.84[CEU][hapmap];0.90[CHB][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34732616	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4729994	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];0.95[LWK][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap]
rs4729996	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap]
rs6465980	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs7777442	0.83[CEU][hapmap];0.85[CHB][hapmap];0.94[YRI][hapmap]
rs7787988	0.92[CEU][hapmap];0.98[GIH][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap]
rs979522	0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608065	chr7:103817597-103990755	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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