Variant report

Variant	rs7787988
Chromosome Location	chr7:103993369-103993370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10254423	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10274138	0.85[MEX][hapmap]
rs10953426	0.86[YRI][hapmap]
rs12705207	0.96[CEU][hapmap]
rs13234807	0.96[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs1465197	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[YRI][hapmap]
rs1468141	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2106503	0.90[MEX][hapmap]
rs2188491	0.90[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs2385234	1.00[ASN][1000 genomes]
rs2891724	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4729993	0.92[CEU][hapmap];0.98[GIH][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap]
rs4729994	0.96[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4729996	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs4729999	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4730000	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs6465980	0.91[CEU][hapmap]
rs6465983	0.86[YRI][hapmap]
rs7777442	0.88[CEU][hapmap]
rs7787976	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];0.93[YRI][hapmap]
rs7788386	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7794488	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7800144	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs979522	0.96[CEU][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7787988	CDHR3	cis	parietal	SCAN
rs7787988	ORAI2	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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