Variant report

Variant	rs7788386
Chromosome Location	chr7:103993454-103993455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10254423	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1465197	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs1468141	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2188491	0.89[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2385234	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4729996	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs4729999	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4730000	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap]
rs7787976	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap]
rs7787988	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7794488	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7800144	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7788386	ZNHIT1	cis	parietal	SCAN
rs7788386	RABL5	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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